Hg_chrom5_TN10mRNA_9510
Organism: Heterodera glycines Gene Locus: chr5:3546000-3552323 Feature type: polypeptideProtein Sequence
Length: 1,377
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.557 | 1.452 | 0.621 | 0.501 | 2.082 | 1.006 | 0.666 | 0.654 | 1.275 | 1.482 | 1.706 | 1.367 | 1.614 | 0.419 | 1.008 | 0.674 | 0.702 | 0.627 | 1.397 | 0.769 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8941
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
17-ppJ2_pJ2
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
nucleus
|
KKRKR,KRYSTNCAFQKSKIR,KKMKQLLLSKEKAEKK,KRKRFLGELLDTDGIRKIK,RKRFLGELLDTDGIRKIKE,KKLIEFTQLYAIEQNKRRE,KEKGKNEKEKEEKEKREERKEEKRKRKTEGQSEKRQKHNEKEK
|
— | — | — | — |
1-18
|
0.992
|
1.000
|
0.000
|
1.000
|
0.749
|
0.179
|
0.011
|
0.470
|
0.113
|
0.096
|
0.101
|
0.013
|
0.125
|
0.120
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009279
|
1.000
|
1.000
|
Hsc_gene_19962.t1
|
Hsc_gene_19961.t1;Hsc_gene_19962.t1
|
— |
O42617.1 Poly(A) polymerase PAPalpha [Candida albicans SC5314]
|
NXV86644.1 PAPOG polymerase [Calonectris borealis]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:1990817
|
GO:0005575_0.768|GO:0110165_0.766|GO:0005622_0.722|GO:0016020_0.698|GO:0043226_0.664|GO:0043229_0.641|GO:0008150_0.624|GO:0043227_0.602|GO:0043231_0.561|GO:0003674_0.542|GO:0009987_0.531
|
IPR007012+1091-1231+|IPR043519+924-1080_925-1051+
|
— |
PF04928+1091-1231+Poly(A)_polymerase_central_domain
|
— |
PTHR10682+865-1343+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
510-659;1363-1377
|
2.000
|
1-509;660-1362
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.593
|
161188.240
|
7.858
|
13.000
|
33.406
|
11.547
|
52.578
|
47.422
|
17.502
|
15.904
|
36.819
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
786.445
|
22.342
|
118.196
|
132.814
|
47.908
|
9.639
|
20.570
|
55.916
|
1572.789
|
2108.335
|
1878.815
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.171
|
2.432
|
0.278
|
-1.502
|
-2.299
|
1.102
|
2.438
|
-1.305
|
— |
-3.384
|
-5.127
|
— | — |