Hg_chrom5_TN10mRNA_9513
Organism: Heterodera glycines Gene Locus: chr5:3557796-3561286 Feature type: polypeptideProtein Sequence
Length: 389
(Signal peptide: 1-40)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.837 | 1.016 | 1.168 | 0.975 | 0.686 | 1.121 | 0.704 | 1.799 | 1.257 | 0.938 | 0.974 | 1.663 | 1.214 | 0.84 | 1.364 | 1.285 | 0.885 | 0.623 | 1.384 | 1.059 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8944
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Not_Clustered
|
0.405
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
mitochondria
|
KRWIYQSDIRSTRRSKS
|
14-36
|
0.884
|
35-64
|
0.749
|
1-40
|
— |
0.654
|
— |
0.000
|
0.072
|
0.060
|
0.031
|
0.121
|
0.099
|
0.124
|
0.318
|
0.006
|
0.186
|
0.905
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009282
|
1.000
|
1.000
|
Hsc_gene_19965.t1
|
Hsc_gene_19965.t1
|
— |
P55113.2 Zinc metalloproteinase nas-7 [Caenorhabditis elegans]
|
KAI1728992.1 astacin (Peptidase family m12A) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270
|
GO:0008150_0.774|GO:0005575_0.607|GO:0110165_0.607|GO:0003674_0.594|GO:0032501_0.524
|
IPR001506+98-291_107-290_128-146_181-199_200-217_239-254_276-289+|IPR003582+354-389_355-389+|IPR006026+103-244+|IPR024079+54-293+|IPR034035+109-288+
|
SM00235+103-244+
|
PF01400+107-290+Astacin_(Peptidase_family_M12A)|PF01549+354-389+ShK_domain-like
|
G3DSA:3.40.390.10:FF:000015+57-293+Meprin_A_subunit
|
PTHR10127+57-370+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-18
|
1.000
|
19-389
|
3lqb_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.865
|
44187.130
|
8.910
|
17.000
|
27.249
|
13.368
|
50.386
|
49.614
|
16.710
|
10.540
|
49.614
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
497.698
|
344.346
|
130.764
|
109.694
|
471.989
|
2954.001
|
156.933
|
1242.591
|
53.984
|
108.070
|
84.891
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.626
|
-1.787
|
— |
2.073
|
2.660
|
-4.222
|
-1.369
|
-2.834
|
— | — | — | — | — |