SCN Proteipedia

Hg_chrom5_TN10mRNA_9516

Organism: Heterodera glycines Gene Locus: chr5:3568766-3572135 Feature type: polypeptide

Protein Sequence

Length: 722

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.564	1.643	0.831	1.91	1.039	0.923	0.742	1.731	1.046	0.992	1.196	1.059	1.308	0.826	1.385	1.049	0.636	0.839	0.959	0.855	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_8947	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	24-Not_Clustered	0.529

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KKPR,RKVTSDSIQSNKRLKKT	—	—	—	—	—	—	0.000	—	—	0.933	0.100	0.030	0.225	0.027	0.024	0.027	0.019	0.065	0.022

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009285	1.000	1.000	Hsc_gene_19968.t1	Hsc_gene_19968.t1	—	Q99MY8.3 Histone-lysine N-methyltransferase ASH1L [Mus musculus]	KAF7638870.1 Histone-lysine N-methyltransferase [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0008150_0.914\|GO:0005575_0.894\|GO:0110165_0.894\|GO:0009987_0.856\|GO:0003674_0.848\|GO:0005622_0.825\|GO:0008152_0.745\|GO:0043226_0.745\|GO:0043170_0.734\|GO:0043229_0.726\|GO:0003824_0.721\|GO:0016020_0.707\|GO:0065007_0.704\|GO:0050789_0.692\|GO:0071840_0.692\|GO:0016043_0.686\|GO:0050794_0.671\|GO:0044238_0.669\|GO:0140096_0.669\|GO:0016740_0.660\|GO:0043227_0.643\|GO:0043231_0.636\|GO:0044237_0.633\|GO:0009058_0.629\|GO:0044249_0.614\|GO:0006325_0.613\|GO:0006338_0.613\|GO:0009059_0.610\|GO:0008168_0.607\|GO:0016741_0.607\|GO:0008276_0.603\|GO:0010467_0.603\|GO:0005488_0.598\|GO:0008757_0.588\|GO:0140993_0.586\|GO:0008170_0.584\|GO:0016278_0.584\|GO:0016279_0.584\|GO:0042054_0.581\|GO:0140938_0.581\|GO:0019222_0.577\|GO:0031323_0.571\|GO:0060255_0.568\|GO:0005634_0.566\|GO:0006139_0.564\|GO:0009889_0.549\|GO:0010468_0.549\|GO:0010556_0.549\|GO:0031326_0.549\|GO:0090304_0.548\|GO:0050896_0.509	IPR001214+506-625_506-631_517-625+\|IPR001965+135-192_193-244_256-309+\|IPR003616+632-648+\|IPR011011+254-309+\|IPR046341+410-667_454-645+\|IPR050777+142-691+	SM00249+135-192_193-244_256-309+\|SM00317+506-631+	PF00856+517-625+SET_domain	—	PTHR22884+142-691+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	700-722	1.000	1-699	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.873	82424.110	8.757	40.500	28.947	12.327	50.831	49.169	18.144	10.803	49.307

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	turquoise	444.433	97.987	316.348	623.097	771.011	420.642	836.290	221.608	40.703	681.247	406.728

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.461	2.532	1.087	0.276	-0.860	1.002	-1.038	2.061	-4.202	—	—	—	—

No JSON data available for plots.

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