SCN Proteipedia

Hg_chrom5_TN10mRNA_9522

Organism: Heterodera glycines Gene Locus: chr5:3581497-3584586 Feature type: polypeptide

Protein Sequence

Length: 634

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.807	1.21	1.032	0.49	1.393	1.901	0.77	1.42	0.806	0.853	0.502	1.021	1.446	1.304	1.449	1.465	0.827	0.621	0.364	0.51	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_8953	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	8-Eggs_J4_Males	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	nucleus	—	RRRERLNNLSQEEKINRRK,RRERLNNLSQEEKINRRKH,RRKHKNRIAAQAARDRKKV,RKHKNRIAAQAARDRKKVN,KINRRKHKNRIAAQAARDRKK	25-46	0.916	22-62	1.000	—	—	0.000	—	—	0.848	0.185	0.026	0.394	0.055	0.042	0.034	0.009	0.071	0.031

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009290	1.000	1.000	Hsc_gene_19974.t1	Hsc_gene_19974.t1	—	G5EE07.1 X-box-binding protein 1 [Caenorhabditis elegans]	KAF7633783.1 BZIP domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003700\|GO:0006355	GO:0008150_0.965\|GO:0065007_0.929\|GO:0005575_0.926\|GO:0009987_0.926\|GO:0110165_0.923\|GO:0050789_0.922\|GO:0050794_0.906\|GO:0005622_0.878\|GO:0008152_0.843\|GO:0019222_0.843\|GO:0031323_0.843\|GO:0044237_0.843\|GO:0043170_0.836\|GO:0044238_0.836\|GO:0060255_0.836\|GO:0080090_0.836\|GO:0009058_0.821\|GO:0009059_0.821\|GO:0010467_0.821\|GO:0044249_0.821\|GO:0050896_0.820\|GO:0009889_0.817\|GO:0010556_0.817\|GO:0031326_0.817\|GO:0010468_0.814\|GO:0006139_0.809\|GO:0016070_0.806\|GO:0090304_0.806\|GO:0034654_0.805\|GO:0141187_0.805\|GO:0019219_0.799\|GO:0032774_0.798\|GO:0051252_0.795\|GO:0006351_0.788\|GO:0051716_0.788\|GO:2001141_0.783\|GO:0006355_0.776\|GO:0007154_0.753\|GO:0023052_0.753\|GO:0006366_0.752\|GO:0007165_0.734\|GO:0042221_0.726\|GO:0006950_0.725\|GO:0035556_0.697\|GO:0003674_0.694\|GO:0005488_0.694\|GO:0033554_0.694\|GO:0032501_0.692\|GO:0048518_0.672\|GO:0006986_0.670\|GO:0030968_0.670\|GO:0034620_0.670\|GO:0034976_0.670\|GO:0035966_0.670\|GO:0035967_0.670\|GO:0048522_0.662\|GO:0009893_0.627\|GO:0010604_0.623\|GO:0031325_0.621\|GO:0009891_0.610\|GO:0031328_0.606\|GO:0010557_0.599\|GO:0048519_0.597\|GO:0045935_0.593\|GO:0051254_0.593\|GO:0006357_0.587\|GO:0003676_0.586\|GO:0097159_0.586\|GO:1902680_0.578\|GO:0048523_0.576\|GO:0045893_0.573\|GO:0019538_0.568\|GO:0043226_0.557\|GO:0016020_0.556\|GO:0045944_0.556\|GO:0051179_0.550\|GO:0003677_0.540\|GO:0009056_0.540\|GO:0043565_0.540\|GO:0003690_0.538\|GO:0009057_0.538\|GO:1990837_0.538\|GO:0009605_0.536\|GO:0044419_0.533\|GO:0009607_0.531\|GO:0043229_0.531\|GO:0051234_0.531\|GO:0043207_0.529\|GO:0051707_0.529\|GO:1901698_0.528\|GO:0006508_0.525\|GO:0006810_0.525\|GO:0000976_0.524\|GO:0001067_0.524\|GO:0030163_0.523\|GO:0140110_0.520\|GO:0009617_0.518\|GO:0051603_0.517\|GO:0032502_0.506\|GO:0048856_0.506\|GO:0008219_0.501\|GO:0012501_0.501\|GO:0043067_0.501\|GO:0003700_0.497\|GO:0006915_0.497\|GO:0042981_0.496\|GO:0070887_0.493\|GO:0043069_0.492\|GO:0043066_0.490\|GO:0043227_0.479\|GO:0097190_0.478\|GO:0007275_0.477\|GO:0043231_0.471\|GO:0070059_0.471\|GO:0097193_0.471\|GO:0005515_0.468\|GO:0005634_0.454\|GO:0048731_0.454\|GO:0030154_0.438\|GO:0048869_0.438\|GO:0005737_0.423\|GO:0048468_0.417\|GO:0009628_0.391\|GO:0009653_0.384\|GO:0042592_0.375\|GO:0050793_0.375\|GO:0023051_0.374\|GO:0010646_0.373\|GO:0051239_0.372\|GO:0048583_0.370\|GO:0051641_0.368\|GO:0048878_0.364\|GO:0019899_0.363\|GO:0009966_0.358\|GO:0010498_0.357\|GO:0055088_0.357\|GO:0036498_0.353\|GO:0036503_0.353\|GO:0065008_0.352\|GO:0045595_0.351	IPR004827+158-222_160-223_165-180+\|IPR046347+161-221+\|IPR052470+146-284+	SM00338+158-222+	—	—	PTHR46542+146-284+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-440	1.000	441-634	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.681	70806.850	5.184	-14.000	27.287	10.252	55.205	44.795	13.249	14.038	51.893

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	purple	paleturquoise	6178.693	8128.675	5639.408	5109.865	6447.837	11080.676	5814.299	7545.025	8040.899	2338.939	4782.636

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.756	-0.807	—	0.303	0.796	-0.919	-0.657	-0.233	1.663	—	—	—	—

No JSON data available for plots.

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