Hg_chrom5_TN10mRNA_9524
Organism: Heterodera glycines Gene Locus: chr5:3587677-3589402 Feature type: polypeptideProtein Sequence
Length: 366
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.762 | 0.953 | 1.192 | 1.319 | 1.275 | 0.841 | 0.846 | 1.23 | 1.7 | 1.108 | 0.538 | 2.089 | 1.29 | 0.841 | 1.115 | 0.703 | 0.627 | 1.283 | 0.841 | 0.804 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8955
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.649
|
0.194
|
0.366
|
0.716
|
0.187
|
0.198
|
0.169
|
0.230
|
0.187
|
0.017
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009291
|
1.000
|
1.000
|
Hsc_gene_19976.t1
|
Hsc_gene_19976.t1
|
— |
Q6IP91.1 Serine/threonine-protein phosphatase 4 catalytic subunit [Xenopus laevis]
|
KAI3420182.1 Serine/threonine-protein phosphatase 4 catalytic subunit [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004722|GO:0016787
|
GO:0008150_0.870|GO:0005575_0.827|GO:0009987_0.773|GO:0110165_0.773|GO:0005622_0.696|GO:0003674_0.643|GO:0005737_0.605|GO:0016020_0.576|GO:0065007_0.541|GO:0003824_0.534|GO:0050789_0.526|GO:0043226_0.519
|
IPR004843+107-300+|IPR006186+79-349_107-134_136-163_169-193_170-175_204-230_233-260_289-309_311-327+|IPR029052+60-366_62-352+|IPR047129+63-366+
|
SM00156+79-349+
|
PF00149+107-300+Calcineurin-like_phosphoesterase
|
G3DSA:3.60.21.10:FF:000005+64-366+Serine/threonine-protein_phosphatase
|
PTHR45619+63-366+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-39
|
1.000
|
40-366
|
3p71_C
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.724
|
41059.190
|
4.636
|
-14.500
|
25.683
|
10.929
|
41.803
|
58.197
|
11.475
|
14.208
|
49.727
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
419.570
|
90.062
|
251.659
|
335.159
|
724.032
|
409.033
|
1294.423
|
112.995
|
30.018
|
606.597
|
359.491
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.250
|
1.759
|
0.524
|
1.080
|
-0.810
|
1.673
|
-1.964
|
3.662
|
-4.460
|
— | — | — | — |
No JSON data available for plots.