Hg_chrom5_TN10mRNA_9527
Organism: Heterodera glycines Gene Locus: chr5:3597460-3600085 Feature type: polypeptideProtein Sequence
Length: 621
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.917 | 0.786 | 0.732 | 0.5 | 1.208 | 0.908 | 0.748 | 1.771 | 1.324 | 1.371 | 0.805 | 1.421 | 1.744 | 1.332 | 1.117 | 0.943 | 0.581 | 0.903 | 1.115 | 0.758 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8958
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-Not_Clustered
|
0.949
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular|endoplasmic_reticulum
|
— | — | — | — |
49-70
|
0.986
|
— | — |
0.010
|
— | — |
0.077
|
0.115
|
0.026
|
0.247
|
0.753
|
0.364
|
0.318
|
0.042
|
0.229
|
0.710
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009294
|
1.000
|
1.000
|
Hsc_gene_19979.t1
|
Hsc_gene_19979.t1
|
— |
Q04456.1 Gut esterase 1 [Caenorhabditis briggsae]
|
KAI1702829.1 carboxylesterase family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.839|GO:0003674_0.811|GO:0005575_0.771|GO:0110165_0.766|GO:0009987_0.754|GO:0016020_0.624|GO:0003824_0.560|GO:0043226_0.558|GO:0005622_0.540|GO:0008152_0.532|GO:0065007_0.525
|
IPR002018+60-593+|IPR019819+143-153+|IPR019826+241-256+|IPR029058+42-603_57-594+|IPR050309+46-598+
|
— |
PF00135+60-593+Carboxylesterase_family
|
— |
PTHR11559+46-598+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
616-621
|
1.000
|
1-615
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.697
|
70062.740
|
7.190
|
8.000
|
25.604
|
13.849
|
42.673
|
57.327
|
14.332
|
11.272
|
46.055
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkgreen
|
1921.230
|
70.722
|
1532.763
|
953.760
|
795.290
|
237.012
|
351.970
|
766.847
|
7892.764
|
720.174
|
3794.141
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.210
|
3.617
|
-0.577
|
-0.293
|
-1.732
|
0.581
|
1.590
|
-0.981
|
3.341
|
-2.880
|
— | — | — |
No JSON data available for plots.