Hg_chrom5_TN10mRNA_9529
Organism: Heterodera glycines Gene Locus: chr5:3601340-3604004 Feature type: polypeptideProtein Sequence
Length: 531
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.007 | 0.701 | 0.548 | 0.584 | 0.345 | 0.773 | 0.426 | 0.847 | 1.632 | 2.189 | 0.599 | 0.554 | 2.929 | 1.014 | 0.884 | 1.587 | 0.772 | 1.113 | 0.724 | 0.166 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8960
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
lysosome_vacuole
|
— | — |
52-91
|
0.970
|
14-52
|
0.972
|
— | — |
0.002
|
— | — |
0.091
|
0.089
|
0.016
|
0.163
|
0.407
|
0.511
|
0.435
|
0.020
|
0.411
|
0.054
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004061
|
1.000
|
2.000
|
Hsc_gene_19981.t2;Hsc_gene_19981.t3
|
— | — |
Q4R7S2.2 Sodium/hydrogen exchanger 9B1 [Macaca fascicularis]
|
KAI1700260.1 sodium/hydrogen exchanger family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
|
GO:0008150_0.952|GO:0005575_0.936|GO:0110165_0.936|GO:0016020_0.914|GO:0009987_0.911|GO:0071944_0.897|GO:0005886_0.888|GO:0006810_0.750|GO:0051179_0.750|GO:0051234_0.750|GO:0005622_0.583|GO:0003674_0.571|GO:0005737_0.566|GO:0043226_0.555|GO:0043229_0.555|GO:0055085_0.547|GO:0043227_0.540|GO:0005215_0.503|GO:0022857_0.503
|
IPR006153+134-326+|IPR038770+122-330+|IPR051843+62-326+
|
— |
PF00999+134-326+Sodium/hydrogen_exchanger_family
|
— |
PTHR31102+62-326+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
528-531
|
1.000
|
1-527
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.860
|
58669.610
|
10.310
|
21.500
|
15.066
|
13.748
|
36.911
|
63.089
|
9.981
|
5.085
|
48.399
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
506.901
|
176.493
|
1181.428
|
811.192
|
390.941
|
210.124
|
501.108
|
2261.654
|
8.412
|
136.530
|
81.622
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.513
|
2.063
|
-0.433
|
-1.084
|
-0.882
|
1.262
|
3.324
|
-2.034
|
— |
6.854
|
— | — | — |
No JSON data available for plots.