Hg_chrom5_TN10mRNA_9533
Organism: Heterodera glycines Gene Locus: chr5:3617552-3619804 Feature type: polypeptideProtein Sequence
Length: 385
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.785 | 0.785 | 1.086 | 0.448 | 1.255 | 1.399 | 0.866 | 1.429 | 1.558 | 1.088 | 0.708 | 1.681 | 2.165 | 0.699 | 1.325 | 0.965 | 0.639 | 0.905 | 0.599 | 0.458 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8964
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm
|
— | — | — | — |
22-58
|
0.901
|
— | — |
0.000
|
— | — |
0.461
|
0.451
|
0.087
|
0.554
|
0.157
|
0.226
|
0.146
|
0.198
|
0.064
|
0.050
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009299
|
1.000
|
1.000
|
Hsc_gene_19984.t1
|
Hsc_gene_19984.t1
|
— |
Q22633.1 4-hydroxyphenylpyruvate dioxygenase [Caenorhabditis elegans]
|
KAI1718747.1 glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003868|GO:0009072|GO:0016701
|
GO:0005575_0.664|GO:0110165_0.664|GO:0008150_0.619|GO:0005622_0.616|GO:0016020_0.601|GO:0003674_0.593|GO:0005737_0.588|GO:0043226_0.555|GO:0043227_0.515|GO:0009987_0.512
|
IPR004360+188-296+|IPR005956+4-383_10-382_14-381+|IPR029068+4-161_5-369_169-383+|IPR037523+13-142_173-339+|IPR041735+174-374+|IPR041736+14-155+
|
— |
PF00903+188-296+Glyoxalase/Bleomycin_resistance_protein/Dioxygenase_superfamily
|
G3DSA:3.10.180.10:FF:000022+168-384+4-hydroxyphenylpyruvate_dioxygenase
|
PTHR11959+10-382+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
383-385
|
1.000
|
1-382
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.505
|
43644.720
|
5.976
|
-3.500
|
27.532
|
12.987
|
47.013
|
52.987
|
14.026
|
13.506
|
44.935
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
1620.630
|
1237.574
|
1002.399
|
634.620
|
630.195
|
5737.097
|
4449.924
|
2603.590
|
151.498
|
865.859
|
559.704
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.534
|
-1.101
|
-0.550
|
— |
3.200
|
-0.355
|
-1.253
|
0.919
|
— | — | — | — | — |
No JSON data available for plots.