Hg_chrom5_TN10mRNA_9534
Organism: Heterodera glycines Gene Locus: chr5:3620332-3621395 Feature type: polypeptideProtein Sequence
Length: 135
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.775 | 1.206 | 0.269 | 0.511 | 0.864 | 1.899 | 1.587 | 0.741 | 1.646 | 1.101 | 0.561 | 1.743 | 0.617 | 0.712 | 2.268 | 1.058 | 0.364 | 1.01 | 0.57 | 0.436 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8965
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
PRTKRQIELRAAKRRKRKALK
|
44-65
|
0.938
|
28-79
|
0.910
|
— | — |
0.000
|
— | — |
0.110
|
0.022
|
0.013
|
0.234
|
0.463
|
0.583
|
0.321
|
0.107
|
0.720
|
0.124
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009300
|
1.000
|
1.000
|
Hsc_gene_19985.t1
|
— | — | — |
NP_001379030.1 Transmembrane inner ear [Caenorhabditis elegans];7USW_D Chain D, Transmembrane inner ear expressed protein [Caenorhabditis elegans];7USW_F Chain F, Transmembrane inner ear expressed protein [Caenorhabditis elegans];7USX_D Chain D, Transmembrane inner ear expressed protein [Caenorhabditis elegans];7USX_F Chain F, Transmembrane inner ear expressed protein [Caenorhabditis elegans];7USY_D Chain D, Transmembrane inner ear expressed protein [Caenorhabditis elegans];7USY_F Chain F, Transmembrane inner ear expressed protein [Caenorhabditis elegans];8TKP_C Chain C, Transmembrane inner ear expressed protein [Caenorhabditis elegans];8TKP_F Chain F, Transmembrane inner ear expressed protein [Caenorhabditis elegans];CAA19507.1 Transmembrane inner ear [Caenorhabditis elegans]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR032006+11-71_13-71+
|
— |
PF16038+13-71+TMIE_protein
|
— |
PTHR28635+11-71+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
60-135
|
1.000
|
1-59
|
8tkp_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.793
|
14770.010
|
11.614
|
12.000
|
22.963
|
5.926
|
45.185
|
54.815
|
16.296
|
6.667
|
48.148
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
623.267
|
3387.734
|
590.648
|
274.509
|
138.335
|
667.083
|
679.135
|
1162.970
|
107.829
|
58.267
|
79.508
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.749
|
-3.762
|
-0.996
|
-1.021
|
2.284
|
— |
0.689
|
-0.629
|
— | — | — | — | — |
No JSON data available for plots.