Hg_chrom5_TN10mRNA_9537
Organism: Heterodera glycines Gene Locus: chr5:3624433-3625589 Feature type: polypeptideProtein Sequence
Length: 179
(Signal peptide: 1-27)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.715 | 1.169 | 0.813 | 0.385 | 1.49 | 1.289 | 0.865 | 1.955 | 1.366 | 0.679 | 0.931 | 1.314 | 1.862 | 0.967 | 0.57 | 0.798 | 1.374 | 0.677 | 1.289 | 1.15 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8968
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.961
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — |
1-27
|
0.947
|
1.000
|
0.000
|
0.000
|
0.578
|
0.341
|
0.041
|
0.530
|
0.114
|
0.194
|
0.084
|
0.008
|
0.138
|
0.275
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009302
|
1.000
|
1.000
|
Hsc_gene_19987.t1
|
Hsc_gene_19987.t1
|
— |
Q21882.2 Probable 5-hydroxyisourate hydrolase R09H10.3 [Caenorhabditis elegans]
|
KAI1725077.1 HIUase/Transthyretin family domain-containing protein [Ditylenchus destructor]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006144|GO:0033971
|
GO:0003674_0.787|GO:0008150_0.782|GO:0005575_0.772|GO:0110165_0.710|GO:0005488_0.565
|
IPR014306+53-178_94-178+|IPR023416+39-179_53-178+|IPR036817+39-177_47-178+
|
— |
PF00576+53-178+HIUase/Transthyretin_family
|
— |
PTHR10395+39-179+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-179
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.594
|
20374.760
|
5.261
|
-4.500
|
26.257
|
16.201
|
50.279
|
49.721
|
12.849
|
13.408
|
47.486
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
greenyellow
|
893.779
|
52.614
|
825.893
|
545.059
|
524.882
|
458.952
|
431.629
|
1335.016
|
488.500
|
1978.639
|
1340.008
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.745
|
3.236
|
-0.492
|
— | — | — |
1.441
|
-1.488
|
— | — | — | — | — |