Hg_chrom5_TN10mRNA_9539
Organism: Heterodera glycines Gene Locus: chr5:3630504-3631871 Feature type: polypeptideProtein Sequence
Length: 291
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.999 | 0.799 | 1.0 | 0.592 | 1.26 | 2.82 | 0.777 | 0.515 | 1.069 | 1.068 | 0.937 | 1.819 | 1.145 | 1.916 | 0.491 | 0.687 | 0.676 | 0.781 | 0.793 | 0.303 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8970
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_19989
|
— |
26-Not_Clustered
|
0.852
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — |
1-19
|
0.986
|
1.000
|
0.000
|
0.000
|
0.550
|
0.269
|
0.015
|
0.504
|
0.192
|
0.122
|
0.170
|
0.006
|
0.102
|
0.329
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002194
|
1.000
|
3.000
|
Hsc_gene_14496.t1;Hsc_gene_19989.t1;Hsc_gene_19989.t2
|
Hsc_gene_19989.t2
|
— | — |
CAD2189856.1 unnamed protein product [Meloidogyne enterolobii]
|
PKO63141
|
0.330
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005892
|
— |
IPR033438+145-239+
|
— |
PF17175+145-239+Modulator_of_levamisole_receptor-1
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-160
|
1.000
|
161-291
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.521
|
32047.360
|
4.474
|
-11.500
|
22.680
|
7.216
|
46.048
|
53.952
|
9.622
|
13.058
|
49.828
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
purple
|
2479.688
|
866.092
|
864.636
|
2529.464
|
5350.370
|
12148.835
|
1930.562
|
2784.202
|
170.568
|
792.898
|
526.185
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.230
|
1.409
|
1.656
|
1.049
|
1.198
|
-2.644
|
-2.224
|
-0.389
|
— |
3.959
|
— | — | — |