Hg_chrom5_TN10mRNA_9540
Organism: Heterodera glycines Gene Locus: chr5:3634709-3636275 Feature type: polypeptideProtein Sequence
Length: 360
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.678 | 0.969 | 0.606 | 0.766 | 1.019 | 2.066 | 0.893 | 0.972 | 0.432 | 1.089 | 1.136 | 2.124 | 1.235 | 1.389 | 1.361 | 1.706 | 0.774 | 0.589 | 0.641 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8971
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.952
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRSFELSRQSEANGRKSGR,DKGNGGEKGQRQKAPGKERPKDGKER
|
— | — | — | — | — | — |
0.000
|
— | — |
0.929
|
0.116
|
0.010
|
0.374
|
0.031
|
0.013
|
0.021
|
0.016
|
0.048
|
0.025
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009304
|
1.000
|
1.000
|
Hsc_gene_19990.t1
|
Hsc_gene_19990.t1
|
— | — |
KAI1710645.1 gastrula zinc finger protein XlCGF67.1 [Ditylenchus destructor]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR013087+171-193_171-198_173-193_202-224_202-229_204-224+|IPR036236+169-224+|IPR050527+166-242+
|
SM00355+171-193_202-224+
|
PF00096+171-193_202-224+Zinc_finger,_C2H2_type
|
— |
PTHR24388+166-242+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
80-178;227-360
|
2.000
|
1-79;179-226
|
9e2u_Y
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.941
|
39763.070
|
10.417
|
20.500
|
25.556
|
7.222
|
54.444
|
45.556
|
16.111
|
9.444
|
50.833
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
537.601
|
150.550
|
524.915
|
368.168
|
1263.476
|
1191.892
|
773.723
|
142.772
|
227.722
|
525.404
|
397.826
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.572
|
1.153
|
-0.403
|
1.747
|
— |
-0.612
|
-3.168
|
2.583
|
— | — | — | — | — |
No JSON data available for plots.