Hg_chrom5_TN10mRNA_9543
Organism: Heterodera glycines Gene Locus: chr5:3645344-3653594 Feature type: polypeptideProtein Sequence
Length: 1,927
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.972 | 0.76 | 0.717 | 0.143 | 3.364 | 1.677 | 0.556 | 0.727 | 0.53 | 1.311 | 0.999 | 1.709 | 0.317 | 0.18 | 2.669 | 0.652 | 0.766 | 0.535 | 0.639 | 0.244 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8974
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.855
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RKSK,GRGRK,RLEKRRT,RRLVFLAVKEAKSERR,RRLRMRVMELERRNRE,RKRNERNAALLRKRVE,KREEKEQREEMEKKRET,KKRETERAEAKEGRKRQT,RKRQTEKQTVVKSRKSRE,KRMVEEQAEMERERTKLR,RRNRELSEQYASLRERSR,RRLEAMTREHRNAKKRLA,RKEKNGETEEGEQKVKRKR,RRFVENVAENGRDERERRM,KRDGAETEEETSKSGERKR,RKRTDEWEAEEAEERWERR,RRMETQSRANAEAWEERKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.283
|
0.136
|
0.011
|
0.736
|
0.073
|
0.141
|
0.283
|
0.011
|
0.165
|
0.109
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002195
|
2.000
|
2.000
|
Hsc_gene_19993.t1;Hsc_gene_19993.t2
|
Hsc_gene_19993.t1;Hsc_gene_19993.t2
|
— | — |
KAH7728671.1 Protein Y47G6A.17 [Aphelenchus avenae]
|
No
|
-0.250
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-24;91-309;386-752;1058-1927
|
3.000
|
25-90;310-385;753-1057
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.869
|
226996.960
|
4.912
|
-72.000
|
45.252
|
4.255
|
64.297
|
35.703
|
21.121
|
24.131
|
34.354
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
2568.082
|
1717.791
|
1816.173
|
640.644
|
335.733
|
313.416
|
729.807
|
527.701
|
180.319
|
8819.643
|
5117.076
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.152
|
-1.560
|
-1.393
|
-0.964
|
— |
1.230
|
0.646
|
0.611
|
-5.742
|
— |
-4.378
|
— | — |
No JSON data available for plots.