Hg_chrom5_TN10mRNA_9545
Organism: Heterodera glycines Gene Locus: chr5:3654039-3655440 Feature type: polypeptideProtein Sequence
Length: 349
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.933 | 0.533 | 1.042 | 0.889 | 1.337 | 0.661 | 1.057 | 1.003 | 0.828 | 0.968 | 0.825 | 0.843 | 1.671 | 0.992 | 1.286 | 1.105 | 0.658 | 1.172 | 1.984 | 0.758 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8975
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-20
|
0.995
|
1.000
|
0.000
|
0.000
|
0.212
|
0.156
|
0.086
|
0.318
|
0.251
|
0.323
|
0.278
|
0.075
|
0.259
|
0.709
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009306
|
1.000
|
1.000
|
Hsc_gene_19994.t1
|
Hsc_gene_19994.t1
|
— |
P43510.1 Cathepsin B-like cysteine proteinase 6 [Caenorhabditis elegans]
|
WZW61060.1 cathepsin B-like cysteine protease 2 [Pratylenchus coffeae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006508|GO:0008234
|
GO:0005575_0.775|GO:0110165_0.775|GO:0008150_0.709|GO:0003674_0.636|GO:0005622_0.561|GO:0016020_0.550|GO:0005737_0.528|GO:0009987_0.503
|
IPR000169+117-128+|IPR000668+94-332_94-344_117-132_291-301_306-312+|IPR013128+48-328+|IPR025660+289-299+|IPR025661+306-325+|IPR038765+34-334+
|
SM00645+94-344+
|
PF00112+94-332+Papain_family_cysteine_protease
|
— |
PTHR12411+48-328+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-349
|
1cte_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.627
|
38902.010
|
5.704
|
-3.500
|
27.507
|
13.181
|
44.126
|
55.874
|
13.754
|
13.754
|
52.149
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
blue
|
330.427
|
137.113
|
6.941
|
4.672
|
3.461
|
6.884
|
149.890
|
4.425
|
2.056
|
1326.554
|
758.912
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-4.515
|
-5.009
|
— | — | — |
4.454
|
— |
5.230
|
-6.803
|
— |
-5.867
|
— | — |