Hg_chrom5_TN10mRNA_9547
Organism: Heterodera glycines Gene Locus: chr5:3658006-3663246 Feature type: polypeptideProtein Sequence
Length: 1,247
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.793 | 0.988 | 0.86 | 0.415 | 2.299 | 1.624 | 0.439 | 1.283 | 1.212 | 1.29 | 1.434 | 0.991 | 0.913 | 0.416 | 1.653 | 0.848 | 0.697 | 0.705 | 0.062 | 0.59 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8977
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RARRAF,RRAFEKTKTERHKRF,KKWDENAIRKLKDRRT,RRTALQEELQKLHRTGKR
|
55-76
|
0.923
|
25-45
|
0.985
|
— | — |
0.000
|
— | — |
0.631
|
0.101
|
0.005
|
0.397
|
0.130
|
0.156
|
0.134
|
0.002
|
0.096
|
0.059
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002178
|
3.000
|
1.000
|
Hsc_gene_19996.t1
|
— | — |
O01789.4 Structural maintenance of chromosomes protein 1 [Caenorhabditis elegans]
|
KAI1715437.1 SMC proteins flexible hinge domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0005524|GO:0005694|GO:0007062|GO:0008278|GO:0016887|GO:0051276
|
GO:0005575_0.896|GO:0110165_0.894|GO:0005622_0.877|GO:0008150_0.877|GO:0009987_0.849|GO:0043226_0.823|GO:0043229_0.806|GO:0016020_0.787|GO:0071840_0.759|GO:0016043_0.752|GO:0043228_0.712|GO:0043232_0.712|GO:0043227_0.706|GO:0006996_0.681|GO:0043231_0.656|GO:0032991_0.625|GO:0007049_0.617|GO:0022402_0.617|GO:0003674_0.600|GO:0005488_0.599|GO:0005634_0.594|GO:0000280_0.527|GO:0048285_0.527|GO:0005694_0.517
|
IPR003395+7-1222+|IPR010935+510-631_511-631+|IPR024704+4-1230+|IPR027417+6-196_9-1219_954-1242+|IPR028468+10-153+|IPR036277+472-682+
|
SM00968+510-631+
|
PF02463+7-1222+RecF/RecN/SMC_N_terminal_domain|PF06470+511-631+SMC_proteins_Flexible_Hinge_Domain
|
G3DSA:1.20.1060.20:FF:000001+490-570+Structural_maintenance_of_chromosomes_1A
|
PTHR18937+6-1222+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
320-500;706-762;835-1074
|
4.000
|
1-319;501-705;763-834;1075-1247
|
8ro7_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.599
|
145077.000
|
6.726
|
4.000
|
38.653
|
7.939
|
59.423
|
40.577
|
20.128
|
18.524
|
37.690
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightcyan
|
2599.150
|
5723.972
|
2903.930
|
2654.019
|
3153.845
|
2096.117
|
1851.438
|
2573.283
|
2083.796
|
1949.707
|
2007.174
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.208
|
-1.246
|
— |
0.217
|
-0.574
|
— | — |
-0.332
|
— | — | — | — | — |
No JSON data available for plots.