Hg_chrom5_TN10mRNA_9548
Organism: Heterodera glycines Gene Locus: chr5:3668729-3669672 Feature type: polypeptideProtein Sequence
Length: 110
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.846 | 1.057 | 0.496 | 0.94 | 1.061 | 1.399 | 0.974 | 0.909 | 0.0 | 1.966 | 0.138 | 1.07 | 1.768 | 1.573 | 1.855 | 1.039 | 0.894 | 0.826 | 0.0 | 0.535 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8978
|
— | — |
1.444
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.187
|
0.346
|
0.039
|
0.157
|
0.550
|
0.273
|
0.257
|
0.259
|
0.089
|
0.141
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003775
|
2.000
|
1.000
|
Hsc_gene_8944.t1
|
Hsc_gene_8939.t1;Hsc_gene_8944.t1
|
— |
Q9NPB0.1 SAYSvFN domain-containing protein 1 [Homo sapiens]
|
KAH7730900.1 Protein C13F10.5 [Aphelenchus avenae]
|
No
|
-0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.751|GO:0110165_0.744|GO:0008150_0.707|GO:0016020_0.673|GO:0005622_0.620|GO:0071944_0.606|GO:0005886_0.605|GO:0043226_0.581|GO:0005737_0.579|GO:0043229_0.555|GO:0043227_0.554|GO:0043231_0.545|GO:0008152_0.505|GO:0043170_0.505
|
IPR019387+45-104+|IPR039159+46-104+
|
— |
PF10260+45-104+Uncharacterized_conserved_domain_(SAYSvFN)
|
— |
PTHR13527+46-104+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-39
|
1.000
|
40-110
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.891
|
12163.860
|
7.753
|
2.000
|
20.909
|
10.000
|
43.636
|
56.364
|
11.818
|
9.091
|
51.818
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
salmon
|
13.405
|
1.924
|
4.021
|
2.886
|
2.180
|
1.642
|
6.795
|
1.106
|
4.011
|
47.931
|
29.108
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
2.063
|
— |
2.770
|
— | — | — | — | — |
No JSON data available for plots.