SCN Proteipedia

Hg_chrom5_TN10mRNA_9550

Organism: Heterodera glycines Gene Locus: chr5:3675112-3676441 Feature type: polypeptide

Protein Sequence

Length: 291

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.48	1.518	1.437	0.355	1.775	1.498	0.368	1.203	1.069	1.254	1.041	2.021	0.859	0.925	1.683	0.982	0.732	0.625	0.529	0.505	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_8980	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Not_Clustered	0.868

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.467	0.184	0.015	0.597	0.074	0.094	0.133	0.094	0.076	0.035

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009308	1.000	1.000	Hsc_gene_19997.t1	Hsc_gene_19997.t1;Hsc_gene_19998.t1	—	Q95X94.1 Centriolar and ciliogenesis-associated protein hyls-1 [Caenorhabditis elegans]	KAF7636282.1 HYLS1_C domain-containing protein [Meloidogyne graminicola]	No	0.030

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.937\|GO:0005575_0.923\|GO:0110165_0.923\|GO:0005622_0.902\|GO:0009987_0.897\|GO:0043226_0.869\|GO:0016020_0.855\|GO:0043229_0.853\|GO:0043227_0.801\|GO:0032501_0.792\|GO:0071840_0.783\|GO:0016043_0.779\|GO:0043228_0.742\|GO:0043232_0.739\|GO:0006996_0.730\|GO:0032991_0.730\|GO:0051179_0.726\|GO:0051641_0.726\|GO:0051234_0.713\|GO:0006810_0.710\|GO:0051649_0.706\|GO:0044085_0.705\|GO:0033036_0.702\|GO:0070727_0.702\|GO:0008104_0.699\|GO:0007017_0.697\|GO:0007010_0.696\|GO:0016192_0.696\|GO:0022607_0.696\|GO:0046907_0.695\|GO:0030030_0.694\|GO:0120036_0.693\|GO:0051640_0.689\|GO:0051656_0.689\|GO:0000226_0.687\|GO:0033365_0.686\|GO:0007018_0.685\|GO:0070925_0.684\|GO:0030705_0.683\|GO:0048193_0.683\|GO:0030031_0.682\|GO:0010970_0.681\|GO:0099111_0.681\|GO:0120031_0.681\|GO:0001578_0.680\|GO:0031503_0.680\|GO:0005886_0.679\|GO:0005929_0.679\|GO:0006903_0.679\|GO:0030990_0.679\|GO:0035082_0.679\|GO:0035735_0.679\|GO:0042073_0.679\|GO:0042995_0.679\|GO:0044782_0.679\|GO:0048199_0.679\|GO:0051648_0.679\|GO:0051650_0.679\|GO:0060271_0.679\|GO:0061512_0.679\|GO:0071944_0.679\|GO:0097712_0.679\|GO:0098590_0.679\|GO:0120025_0.679\|GO:1905349_0.679\|GO:0007610_0.677\|GO:0060756_0.670\|GO:0005856_0.608\|GO:0015630_0.589\|GO:0005815_0.573\|GO:0005814_0.560\|GO:0097730_0.540	IPR027918+225-272+	—	PF15311+225-272+Hydrolethalus_syndrome_protein_1_C-terminus	—	—

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	123-291	1.000	1-122	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.579	34031.140	5.208	-6.500	36.082	7.904	59.794	40.206	17.526	18.557	42.955

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey	787.914	687.245	622.167	605.199	786.686	695.899	756.337	770.520	994.462	854.760	914.632

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.372	-0.321	—	0.346	-0.162	—	—	—	—	—	—	—	—

No JSON data available for plots.

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