SCN Proteipedia

Hg_chrom5_TN10mRNA_9554

Organism: Heterodera glycines Gene Locus: chr5:3683606-3686893 Feature type: polypeptide

Protein Sequence

Length: 556

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.962	0.795	0.654	0.186	1.709	1.337	0.514	0.899	1.119	1.142	1.635	1.481	0.649	1.107	1.468	0.925	0.885	0.899	0.692	0.529	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_8984	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RRSSQDSLAEKVKSK,RKLTREEKAAKAIRK,RKQMAERAQKHVEDNRSRK,KKERKKLRRQNRREALKERAEKIRLGLEKPP	—	—	—	—	—	—	0.000	—	—	0.686	0.077	0.020	0.368	0.092	0.045	0.043	0.040	0.044	0.050

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009311	1.000	1.000	Hsc_gene_20003.t1	Hsc_gene_20003.t1	—	O43395.2 U4/U6 small nuclear ribonucleoprotein Prp3 [Homo sapiens]	KAI1726776.1 pre-mRNA processing factor 3 (PRP3) domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000398\|GO:0046540	GO:0008150_0.941\|GO:0005575_0.926\|GO:0110165_0.921\|GO:0009987_0.895\|GO:0005622_0.891\|GO:0043226_0.848\|GO:0016020_0.844\|GO:0043229_0.830\|GO:0008152_0.777\|GO:0043170_0.775\|GO:0044238_0.775\|GO:0009058_0.773\|GO:0044237_0.771\|GO:0043227_0.769\|GO:0044249_0.756\|GO:0009059_0.755\|GO:0010467_0.751\|GO:0006139_0.748\|GO:0043231_0.735\|GO:0034654_0.733\|GO:0090304_0.732\|GO:0141187_0.722\|GO:0016070_0.721\|GO:0032774_0.718\|GO:0006396_0.688\|GO:0016071_0.681\|GO:0006397_0.679\|GO:0000375_0.677\|GO:0000377_0.677\|GO:0000398_0.677\|GO:0008380_0.677\|GO:0005634_0.674\|GO:0071840_0.589\|GO:0016043_0.572\|GO:0032991_0.547\|GO:0003674_0.514	IPR010541+405-544+\|IPR013881+160-381+\|IPR027104+10-549+	—	PF06544+405-544+Small_nuclear_ribonucleoprotein_Prp3,_C-terminal_domain\|PF08572+160-381+pre-mRNA_processing_factor_3_domain	—	PTHR14212+10-549+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-166;260-392	2.000	167-259;393-556	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.737	63167.630	10.243	28.000	33.633	6.835	54.137	45.863	19.784	13.849	43.705

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	paleturquoise	2952.737	3010.443	2824.050	2728.658	2966.363	2736.092	2800.968	2727.102	4368.559	2219.178	3140.341

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.322	-0.279	—	—	—	—	—	0.182	—	—	—	—	—

No JSON data available for plots.

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