Hg_chrom5_TN10mRNA_9556
Organism: Heterodera glycines Gene Locus: chr5:3688936-3690329 Feature type: polypeptideProtein Sequence
Length: 283
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.616 | 0.74 | 1.028 | 0.244 | 1.355 | 0.997 | 0.547 | 1.237 | 0.864 | 0.812 | 1.392 | 2.702 | 1.276 | 1.291 | 1.442 | 0.555 | 0.869 | 1.124 | 2.175 | 1.351 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8986
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
0.985
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.074
|
0.962
|
0.015
|
0.111
|
0.007
|
0.052
|
0.044
|
0.004
|
0.063
|
0.019
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009313
|
1.000
|
1.000
|
Hsc_gene_20005.t1
|
Hsc_gene_20005.t1
|
— |
Q61DH4.1 Large ribosomal subunit protein uL24m [Caenorhabditis briggsae]
|
KHN76564.1 putative 39S ribosomal protein L24, mitochondrial [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723|GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.789|GO:0110165_0.773|GO:0005622_0.712|GO:0043226_0.663|GO:0016020_0.656|GO:0043229_0.646|GO:0005737_0.637|GO:0043227_0.618|GO:0043231_0.606|GO:0008150_0.508
|
IPR003256+90-274+|IPR005824+107-134_110-141+|IPR008991+101-213+|IPR014722+101-214+|IPR041988+111-161+
|
SM00739+107-134+
|
PF00467+110-141+KOW_motif
|
— |
PTHR12903+90-274+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-283
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.724
|
33495.550
|
9.540
|
10.500
|
32.509
|
14.488
|
48.763
|
51.237
|
18.728
|
13.781
|
42.756
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
steelblue
|
1319.454
|
1340.739
|
1195.314
|
1280.097
|
1382.871
|
1110.604
|
1486.766
|
1191.950
|
1111.920
|
1568.042
|
1372.561
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.396
|
-0.204
|
0.208
|
— |
-0.301
|
0.432
|
— |
0.462
|
— | — | — | — | — |
No JSON data available for plots.