SCN Proteipedia

Hg_chrom5_TN10mRNA_9557

Organism: Heterodera glycines Gene Locus: chr5:3690502-3698229 Feature type: polypeptide

Protein Sequence

Length: 1,193

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.799	1.053	1.006	0.752	1.146	1.204	0.389	1.299	1.043	1.982	0.572	1.331	2.002	0.822	0.958	1.353	0.728	0.813	0.709	0.493	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_8987	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_described	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	cytoplasm\|nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.569	0.101	0.016	0.617	0.226	0.181	0.233	0.016	0.184	0.021

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004062	1.000	2.000	Hsc_gene_19381.t1;Hsc_gene_20006.t1	Hsc_gene_19381.t1;Hsc_gene_20006.t1	—	Q9ESJ0.2 Exportin-4 [Mus musculus]	KAI1733017.1 exportin-4 [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005049\|GO:0051169	GO:0008150_0.966\|GO:0009987_0.917\|GO:0005575_0.911\|GO:0110165_0.906\|GO:0065007_0.875\|GO:0050789_0.859\|GO:0003674_0.848\|GO:0005622_0.847\|GO:0016020_0.841\|GO:0050794_0.838\|GO:0051179_0.806\|GO:0051234_0.786\|GO:0006810_0.782\|GO:0043226_0.782\|GO:0005737_0.780\|GO:0005488_0.774\|GO:0043229_0.768\|GO:0005515_0.754\|GO:0048518_0.754\|GO:0043227_0.753\|GO:0048522_0.744\|GO:0051641_0.738\|GO:0043231_0.724\|GO:0051649_0.717\|GO:0032879_0.713\|GO:0033036_0.707\|GO:0070727_0.707\|GO:0008104_0.705\|GO:0071705_0.704\|GO:0051049_0.702\|GO:0046907_0.699\|GO:0045184_0.695\|GO:0015031_0.691\|GO:0060341_0.689\|GO:0019899_0.686\|GO:0032880_0.686\|GO:0006886_0.683\|GO:1903829_0.677\|GO:0032386_0.676\|GO:0070201_0.676\|GO:0051050_0.675\|GO:0051223_0.674\|GO:0006611_0.670\|GO:0006913_0.670\|GO:0032388_0.670\|GO:0033157_0.670\|GO:0046822_0.670\|GO:0046824_0.670\|GO:0046825_0.670\|GO:0046827_0.670\|GO:0051168_0.670\|GO:0051169_0.670\|GO:0051222_0.670\|GO:0090316_0.670\|GO:1904951_0.670\|GO:0005049_0.650\|GO:0031267_0.650\|GO:0051020_0.650\|GO:0140104_0.650\|GO:0140142_0.650\|GO:0005634_0.602\|GO:0005829_0.587\|GO:0031974_0.567\|GO:0043233_0.567\|GO:0031981_0.563\|GO:0070013_0.563\|GO:0005654_0.558	IPR011989+7-558_708-1189+\|IPR016024+11-1151+\|IPR044189+8-1191+	—	—	—	PTHR12596+8-1191+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-1193	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.607	135185.980	4.914	-31.500	23.470	12.406	46.605	53.395	11.065	12.406	45.935

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	greenyellow	2282.649	2920.104	1781.499	2299.962	2396.832	2107.314	2921.667	1630.432	704.652	3436.423	2265.664

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.943	-0.481	0.478	—	-0.171	0.481	-0.474	0.983	-2.410	—	—	—	—

No JSON data available for plots.

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