Hg_chrom5_TN10mRNA_9562
Organism: Heterodera glycines Gene Locus: chr5:3713522-3714206 Feature type: polypeptideProtein Sequence
Length: 137
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.103 | 0.679 | 1.194 | 0.503 | 0.122 | 2.246 | 0.695 | 2.555 | 0.973 | 1.973 | 0.332 | 0.859 | 0.608 | 0.421 | 2.532 | 0.73 | 0.838 | 0.885 | 0.0 | 1.073 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8992
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.898
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — |
79-99
|
0.998
|
— | — | — | — |
0.000
|
— | — |
0.451
|
0.336
|
0.029
|
0.708
|
0.163
|
0.119
|
0.108
|
0.076
|
0.196
|
0.130
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
P43378.1 Tyrosine-protein phosphatase non-receptor type 9 [Homo sapiens]
|
KAH7720145.1 Protein-tyrosine phosphatase containing protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004725|GO:0006470|GO:0016311
|
GO:0005575_0.774|GO:0110165_0.765|GO:0008150_0.760|GO:0016020_0.708|GO:0009987_0.691|GO:0003674_0.683|GO:0005622_0.580|GO:0003824_0.536|GO:0065007_0.523|GO:0140096_0.506
|
IPR000242+51-114_52-70_54-116_83-98_99-109+|IPR000387+54-107+|IPR003595+11-115+|IPR016130+55-65+|IPR029021+5-123_53-123+|IPR052782+53-122+
|
SM00404+11-115+
|
PF00102+51-114+Protein-tyrosine_phosphatase
|
— |
PTHR46163+53-122+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-137
|
4icz_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.622
|
15626.960
|
11.052
|
13.500
|
27.007
|
10.949
|
48.905
|
51.095
|
19.708
|
7.299
|
44.526
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
brown
|
69.956
|
101.937
|
56.407
|
115.328
|
69.032
|
58.871
|
52.841
|
343.040
|
0.514
|
6.625
|
4.006
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.085
|
— |
1.142
|
-0.775
|
— | — |
2.432
|
-2.553
|
— |
7.223
|
— | — | — |
No JSON data available for plots.