Hg_chrom5_TN10mRNA_9574
Organism: Heterodera glycines Gene Locus: chr5:3758017-3759505 Feature type: polypeptideProtein Sequence
Length: 229
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.66 | 0.914 | 0.794 | 0.151 | 1.383 | 0.896 | 0.416 | 2.183 | 1.262 | 0.649 | 1.456 | 2.312 | 1.577 | 1.68 | 1.693 | 0.437 | 0.501 | 0.926 | 1.68 | 1.413 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9004
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.552
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
KKPTFLLADLIEEAKERAR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.103
|
0.959
|
0.033
|
0.096
|
0.010
|
0.018
|
0.014
|
0.008
|
0.040
|
0.037
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009323
|
1.000
|
1.000
|
Hsc_gene_20014.t1
|
Hsc_gene_20014.t1
|
— | — |
KAH7731595.1 Protein MRPL-22 [Aphelenchus avenae]
|
No
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412|GO:0015934
|
GO:0008150_0.924|GO:0005575_0.872|GO:0110165_0.868|GO:0005622_0.856|GO:0009987_0.853|GO:0008152_0.830|GO:0044238_0.816|GO:0043226_0.811|GO:0009058_0.810|GO:0044237_0.805|GO:0043229_0.803|GO:0016020_0.794|GO:0044249_0.781|GO:0043170_0.778|GO:0005737_0.771|GO:0009059_0.758|GO:0043227_0.755|GO:0043231_0.752|GO:0010467_0.744|GO:0019538_0.733|GO:0006412_0.691|GO:0006414_0.691|GO:0005739_0.670|GO:0032543_0.670|GO:0140053_0.670
|
IPR001063+92-192+|IPR036394+59-229_80-197+|IPR047867+78-203+
|
— |
PF00237+92-192+Ribosomal_protein_L22p/L17e
|
— |
PTHR13501+78-203+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-229
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.643
|
27499.790
|
10.157
|
17.000
|
34.934
|
17.031
|
48.472
|
51.528
|
22.271
|
12.664
|
38.865
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
1401.847
|
887.613
|
1257.182
|
1395.244
|
1531.181
|
1292.435
|
978.616
|
1113.486
|
1758.437
|
1643.343
|
1692.669
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.272
|
0.515
|
0.259
|
— |
-0.230
|
-0.390
|
-0.320
|
— | — | — | — | — | — |
No JSON data available for plots.