Hg_chrom5_TN10mRNA_9575
Organism: Heterodera glycines Gene Locus: chr5:3759638-3760735 Feature type: polypeptideProtein Sequence
Length: 168
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.831 | 0.831 | 1.407 | 0.0 | 2.282 | 1.832 | 0.567 | 0.595 | 0.529 | 1.287 | 1.353 | 1.751 | 0.661 | 0.687 | 1.701 | 0.765 | 0.781 | 0.812 | 0.458 | 0.175 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9005
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-Not_Clustered
|
0.928
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRGVQEKLDKLERRTKKA
|
— | — | — | — | — | — |
0.000
|
— | — |
0.777
|
0.164
|
0.025
|
0.292
|
0.054
|
0.037
|
0.130
|
0.003
|
0.065
|
0.050
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009324
|
1.000
|
1.000
|
Hsc_gene_20013.t1
|
Hsc_gene_20013.t1
|
— |
Q8WUD4.1 Coiled-coil domain-containing protein 12 [Homo sapiens]
|
KAH7731596.1 coiled-coil domain-containing protein 12-like isoform 1 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.935|GO:0110165_0.924|GO:0005622_0.901|GO:0016020_0.848|GO:0043226_0.847|GO:0043229_0.833|GO:0043227_0.775|GO:0043231_0.763|GO:0005634_0.729|GO:0031974_0.640|GO:0043233_0.640|GO:0031981_0.638|GO:0070013_0.638|GO:0005654_0.591
|
IPR013169+9-160_14-149+
|
— |
PF08315+14-149+cwf18_pre-mRNA_splicing_factor
|
— |
PTHR31551+9-160+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-168
|
0.000
|
— |
8ro1_Z
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.762
|
19323.580
|
4.829
|
-6.000
|
39.881
|
4.762
|
60.714
|
39.286
|
18.452
|
21.429
|
42.262
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
darkmagenta
|
1723.295
|
894.556
|
1043.815
|
860.419
|
989.651
|
962.323
|
1196.339
|
923.647
|
2787.531
|
2872.234
|
2835.933
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.193
|
-0.170
|
0.170
|
— |
0.328
|
— |
0.520
|
— |
-1.532
|
— | — | — |
No JSON data available for plots.