Hg_chrom5_TN10mRNA_9576
Organism: Heterodera glycines Gene Locus: chr5:3760738-3764617 Feature type: polypeptideProtein Sequence
Length: 833
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.614 | 0.921 | 0.808 | 0.787 | 1.441 | 1.539 | 0.986 | 1.501 | 1.067 | 1.444 | 0.673 | 0.989 | 1.534 | 0.854 | 1.249 | 1.149 | 0.846 | 0.582 | 1.016 | 0.6 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9006
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RKTKGETTHQKEKEK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.196
|
0.254
|
0.079
|
0.485
|
0.348
|
0.532
|
0.578
|
0.217
|
0.239
|
0.232
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009325
|
1.000
|
1.000
|
Hsc_gene_20012.t1
|
Hsc_gene_20012.t1
|
— |
Q8TBP0.1 TBC1 domain family member 16 [Homo sapiens]
|
KAF7635438.1 Rab-GAP TBC domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.908|GO:0110165_0.908|GO:0016020_0.826|GO:0008150_0.785|GO:0005622_0.775|GO:0043226_0.729|GO:0003674_0.719|GO:0043229_0.697|GO:0005737_0.694|GO:0043227_0.684|GO:0005488_0.674|GO:0009987_0.669|GO:0005515_0.657|GO:0043231_0.641|GO:0065007_0.586|GO:0071944_0.550|GO:0005886_0.543
|
IPR000195+497-746_500-721_504-738+|IPR035969+475-679_658-779+
|
SM00164+497-746+
|
PF00566+504-738+Rab-GTPase-TBC_domain
|
G3DSA:1.10.472.80:FF:000020+655-782+TBC1_domain_family,_member_16
|
PTHR22957+440-772+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
184-380
|
2.000
|
1-183;381-833
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.615
|
93878.830
|
5.931
|
-8.500
|
26.651
|
11.885
|
49.820
|
50.180
|
13.565
|
13.085
|
45.738
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
923.265
|
2922.012
|
2031.135
|
1112.217
|
506.533
|
329.121
|
452.935
|
928.845
|
512.215
|
549.072
|
533.276
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.755
|
-1.531
|
-0.760
|
-1.166
|
-0.608
|
0.471
|
1.395
|
-0.894
|
— | — | — | — | — |
No JSON data available for plots.