Hg_chrom5_TN10mRNA_9577
Organism: Heterodera glycines Gene Locus: chr5:3764882-3765451 Feature type: polypeptideProtein Sequence
Length: 103
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.903 | 0.903 | 0.706 | 1.004 | 1.618 | 0.996 | 0.462 | 1.456 | 1.079 | 1.443 | 1.03 | 2.856 | 1.618 | 0.373 | 1.585 | 0.416 | 1.114 | 0.883 | 0.747 | 0.571 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9007
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
0.989
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.432
|
0.294
|
0.075
|
0.525
|
0.054
|
0.163
|
0.058
|
0.029
|
0.137
|
0.151
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009326
|
1.000
|
1.000
|
Hsc_gene_20011.t1
|
Hsc_gene_20011.t1
|
— |
Q6BZF8.1 Dynein light chain 1, cytoplasmic [Debaryomyces hansenii CBS767]
|
KAF7639673.1 Dynein light chain [Meloidogyne graminicola]
|
KAI9502958
|
0.210
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007017|GO:0030286
|
GO:0005575_0.915|GO:0110165_0.911|GO:0005622_0.820|GO:0043226_0.788|GO:0043229_0.758|GO:0008150_0.689|GO:0009987_0.637|GO:0016020_0.635|GO:0032991_0.613|GO:0043228_0.600|GO:0043232_0.599|GO:0005737_0.595|GO:0005856_0.547|GO:0015630_0.545|GO:0043227_0.544
|
IPR001372+10-99_24-98+|IPR037177+5-99_13-98+
|
SM01375+10-99+
|
PF01221+24-98+Dynein_light_chain_type_1
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-103
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.588
|
12023.000
|
7.780
|
2.500
|
31.068
|
11.650
|
48.544
|
51.456
|
17.476
|
13.592
|
39.806
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
34.583
|
16.164
|
91.411
|
52.382
|
19.416
|
3.627
|
29.396
|
26.269
|
0.514
|
61.416
|
35.315
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.271
|
1.560
|
-0.695
|
-1.467
|
-2.403
|
3.027
|
2.751
|
— |
-6.255
|
6.084
|
— | — | — |
No JSON data available for plots.