Hg_chrom5_TN10mRNA_9580
Organism: Heterodera glycines Gene Locus: chr5:3768516-3770530 Feature type: polypeptideProtein Sequence
Length: 391
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.803 | 1.249 | 0.791 | 0.176 | 0.938 | 0.853 | 0.67 | 0.384 | 1.364 | 1.659 | 0.543 | 1.655 | 1.776 | 1.869 | 1.305 | 0.95 | 0.755 | 1.085 | 0.393 | 0.376 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9010
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
chloroplast
|
— | — | — |
1-51
|
0.902
|
— |
0.938
|
0.159
|
0.000
|
— |
0.281
|
0.151
|
0.058
|
0.353
|
0.131
|
0.261
|
0.058
|
0.007
|
0.218
|
0.823
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_20030.t1
|
— | — |
KAI1726441.1 lipopolysaccharide-binding protein [Ditylenchus destructor]
|
No
|
-0.600
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008289
|
GO:0008150_0.945|GO:0005575_0.923|GO:0110165_0.923|GO:0009987_0.884|GO:0003674_0.852|GO:0065007_0.825|GO:0050789_0.799|GO:0050896_0.787|GO:0051179_0.786|GO:0050794_0.779|GO:0051234_0.778|GO:0006810_0.775|GO:0051716_0.770|GO:0032501_0.769|GO:0005488_0.767|GO:0008152_0.750|GO:0009058_0.734|GO:0044237_0.732|GO:0043170_0.726|GO:0048518_0.723|GO:0006950_0.720|GO:0042221_0.718|GO:0044249_0.717|GO:0009059_0.713|GO:0048522_0.712|GO:0010467_0.701|GO:0019222_0.701|GO:0048583_0.700|GO:0031323_0.698|GO:0051239_0.698|GO:1901700_0.696|GO:0009605_0.695|GO:0060255_0.694|GO:0044419_0.690|GO:0070887_0.690|GO:0009889_0.689|GO:0009893_0.689|GO:0031326_0.689|GO:0009607_0.688|GO:0043207_0.688|GO:0051707_0.688|GO:0002376_0.686|GO:0010468_0.686|GO:0010556_0.686|GO:0006952_0.685|GO:0010604_0.685|GO:0031325_0.685|GO:0009891_0.683|GO:0031328_0.683|GO:0048584_0.683|GO:0033993_0.681|GO:0051240_0.681|GO:0080134_0.681|GO:0098542_0.681|GO:0010557_0.680|GO:0010628_0.679|GO:1901701_0.679|GO:0001775_0.678|GO:0002682_0.678|GO:0009617_0.678|GO:0045321_0.678|GO:0006955_0.677|GO:0002684_0.676|GO:0031347_0.676|GO:0045087_0.676|GO:0140546_0.676|GO:0001816_0.675|GO:0001817_0.675|GO:0006954_0.675|GO:0031349_0.675|GO:0032101_0.675|GO:0032103_0.675|GO:0071396_0.675|GO:0002831_0.674|GO:0042742_0.674|GO:0050776_0.674|GO:0050778_0.674|GO:0002237_0.673|GO:0001819_0.670|GO:0002252_0.670|GO:0002263_0.670|GO:0002274_0.670|GO:0002275_0.670|GO:0002281_0.670|GO:0002366_0.670|GO:0002526_0.670|GO:0002833_0.670|GO:0006953_0.670|GO:0032496_0.670|GO:0032640_0.670|GO:0032680_0.670|GO:0032760_0.670|GO:0042116_0.670|GO:0045088_0.670|GO:0045089_0.670|GO:0050829_0.670|GO:0050830_0.670|GO:0071216_0.670|GO:0071219_0.670|GO:0071222_0.670|GO:0071706_0.670|GO:1903555_0.670|GO:1903557_0.670|GO:0008289_0.658|GO:0097367_0.655|GO:0001530_0.650|GO:0016020_0.590|GO:0005576_0.582|GO:0005615_0.575|GO:0009986_0.556|GO:0043226_0.511|GO:0043227_0.461|GO:0005515_0.420|GO:0071840_0.408|GO:0007154_0.402|GO:0023052_0.398|GO:0016043_0.396|GO:0007165_0.387|GO:0048519_0.382|GO:0010646_0.372|GO:0048523_0.371|GO:0023051_0.367|GO:0006996_0.362|GO:0009966_0.362|GO:0033036_0.361|GO:0007166_0.358|GO:0010647_0.356|GO:0023056_0.355|GO:0061024_0.351
|
IPR017942+78-309_83-256+|IPR017943+72-335+|IPR032942+67-334+
|
SM00328+78-309+
|
PF01273+83-256+LBP_/_BPI_/_CETP_family,_N-terminal_domain
|
— |
PTHR10504+67-334+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
339-391
|
1.000
|
1-338
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.838
|
43376.430
|
7.249
|
1.500
|
20.716
|
8.951
|
40.665
|
59.335
|
10.742
|
9.974
|
50.895
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
darkred
|
330.678
|
119.126
|
3.046
|
2.462
|
234.255
|
600.737
|
25.451
|
108.355
|
0.000
|
1036.679
|
592.388
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-5.512
|
-5.736
|
— |
6.545
|
1.374
|
-4.552
|
-2.585
|
-1.944
|
-10.816
|
— | — | — | — |