Hg_chrom5_TN10mRNA_9582
Organism: Heterodera glycines Gene Locus: chr5:3774322-3776543 Feature type: polypeptideProtein Sequence
Length: 454
(Signal peptide: 1-29)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.05 | 0.563 | 0.721 | 0.456 | 0.808 | 1.468 | 0.472 | 1.762 | 1.224 | 1.518 | 0.133 | 0.259 | 1.897 | 1.144 | 1.438 | 1.322 | 0.903 | 1.268 | 1.525 | 0.648 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9012
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
mitochondria
|
— |
1-27
|
0.987
|
— | — |
1-29
|
0.831
|
0.990
|
4.000
|
4.000
|
0.097
|
0.049
|
0.009
|
0.187
|
0.317
|
0.154
|
0.225
|
0.016
|
0.797
|
0.052
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009330
|
1.000
|
1.000
|
Hsc_gene_20032.t1
|
Hsc_gene_20032.t1
|
— |
Q64018.2 Glycine receptor subunit alpha-1 [Mus musculus]
|
KAI1718384.1 neurotransmitter-gated ion-channel ligand binding domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004888|GO:0005216|GO:0005230|GO:0006811|GO:0016020|GO:0034220
|
GO:0008150_0.925|GO:0005575_0.883|GO:0009987_0.866|GO:0110165_0.849|GO:0016020_0.794|GO:0071944_0.757|GO:0005886_0.748|GO:0065007_0.742|GO:0003674_0.739|GO:0050789_0.717|GO:0051179_0.692|GO:0006810_0.691|GO:0051234_0.691|GO:0007154_0.669|GO:0023052_0.663|GO:0055085_0.626|GO:0007267_0.619|GO:0050896_0.617|GO:0032501_0.590|GO:0006811_0.589|GO:0050794_0.589|GO:0034220_0.588|GO:0030054_0.583|GO:0045202_0.583|GO:0098916_0.583|GO:0099536_0.583|GO:0099537_0.583|GO:0007268_0.582|GO:0051716_0.582|GO:0005215_0.550|GO:0022857_0.550|GO:0015075_0.526|GO:0007165_0.519|GO:0015267_0.517|GO:0022803_0.517|GO:0005216_0.514|GO:0022836_0.509|GO:0015276_0.506|GO:0022834_0.506|GO:0005230_0.501
|
IPR006028+269-289_431-451+|IPR006201+52-376+|IPR006202+48-216+|IPR036719+272-453+|IPR036734+36-261_46-263+|IPR038050+262-454+
|
— |
PF02931+48-216+Neurotransmitter-gated_ion-channel_ligand_binding_domain
|
— |
PTHR18945+52-376+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-454
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.615
|
51088.400
|
6.931
|
4.000
|
20.264
|
14.537
|
43.172
|
56.828
|
11.454
|
8.811
|
49.780
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
898.660
|
685.238
|
2481.182
|
742.500
|
169.213
|
788.749
|
254.789
|
3815.205
|
41.287
|
549.345
|
331.606
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.627
|
— |
-1.632
|
-2.166
|
2.236
|
-1.620
|
2.171
|
-3.763
|
— | — | — | — | — |