Hg_chrom5_TN10mRNA_9583
Organism: Heterodera glycines Gene Locus: chr5:3776923-3779997 Feature type: polypeptideProtein Sequence
Length: 676
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.101 | 0.894 | 1.13 | 0.612 | 1.307 | 1.1 | 0.687 | 1.479 | 1.183 | 1.319 | 0.874 | 2.001 | 1.603 | 0.825 | 1.117 | 0.888 | 0.534 | 0.717 | 0.91 | 0.783 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9013
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm
|
— |
RRRANDCFAGAAKRIEK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.493
|
0.413
|
0.023
|
0.575
|
0.235
|
0.445
|
0.330
|
0.147
|
0.156
|
0.067
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004065
|
1.000
|
2.000
|
Hsc_gene_20033.t1;Hsc_gene_20033.t2
|
Hsc_gene_20033.t1;Hsc_gene_20033.t2
|
— |
Q8TB22.3 Spermatogenesis-associated protein 20 [Homo sapiens]
|
KAI1718385.1 thioredoxin-like domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005975
|
— |
IPR004879+1-108+|IPR008928+136-527+|IPR024705+1-675_1-676+|IPR036249+1-74+
|
— |
PF03190+1-108+Protein_of_unknown_function,_DUF255
|
— |
PTHR42899+1-675+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-676
|
3ira_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.579
|
76506.300
|
5.719
|
-9.000
|
28.254
|
12.574
|
45.858
|
54.142
|
14.201
|
14.053
|
45.562
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellowgreen
|
1819.699
|
5149.606
|
1432.785
|
1721.699
|
1967.557
|
2143.896
|
2018.788
|
1987.755
|
973.111
|
1073.069
|
1030.229
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.075
|
-1.718
|
0.373
|
0.161
|
— | — | — | — | — | — | — | — | — |
No JSON data available for plots.