Hg_chrom5_TN10mRNA_9584
Organism: Heterodera glycines Gene Locus: chr5:3786509-3786986 Feature type: polypeptideProtein Sequence
Length: 101
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.806 | 1.382 | 0.72 | 0.0 | 0.495 | 1.269 | 1.179 | 0.495 | 1.32 | 0.937 | 0.6 | 1.165 | 2.475 | 1.333 | 1.01 | 1.132 | 1.136 | 0.9 | 0.762 | 0.874 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9014
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.540
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.576
|
0.349
|
0.491
|
0.525
|
0.203
|
0.348
|
0.141
|
0.312
|
0.133
|
0.130
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009331
|
1.000
|
1.000
|
Hsc_gene_20035.t1
|
Hsc_gene_20035.t1
|
— |
P52713.1 Probable methylmalonate-semialdehyde/malonate-semialdehyde dehydrogenase [acylating], mitochondrial [Caenorhabditis elegans]
|
KAI1702142.1 aldehyde dehydrogenase family domain-containing protein [Ditylenchus destructor]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004491|GO:0016491|GO:0016620
|
GO:0005575_0.710|GO:0110165_0.702|GO:0005622_0.611|GO:0016020_0.594|GO:0008150_0.584|GO:0043226_0.580|GO:0005737_0.575|GO:0043229_0.565|GO:0043227_0.533|GO:0009987_0.527|GO:0043231_0.521|GO:0003674_0.508
|
IPR010061+2-94+|IPR015590+2-78+|IPR016161+2-80+|IPR016163+1-85+
|
— |
PF00171+2-78+Aldehyde_dehydrogenase_family
|
— |
PTHR43866+2-94+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-101
|
8xxq_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.954
|
11102.600
|
9.624
|
2.500
|
16.832
|
13.861
|
42.574
|
57.426
|
9.901
|
6.931
|
54.455
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
midnightblue
|
1178.039
|
994.739
|
663.282
|
1126.852
|
1711.512
|
1657.523
|
1412.703
|
2308.166
|
322.745
|
1208.822
|
829.074
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.815
|
— |
0.874
|
0.571
|
— |
-0.219
|
0.375
|
-0.565
|
— | — | — | — | — |
No JSON data available for plots.