Hg_chrom5_TN10mRNA_9585
Organism: Heterodera glycines Gene Locus: chr5:3787037-3788174 Feature type: polypeptideProtein Sequence
Length: 227
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.871 | 0.922 | 0.641 | 0.76 | 0.514 | 1.017 | 0.524 | 1.542 | 1.762 | 1.726 | 0.334 | 1.037 | 3.671 | 0.085 | 0.899 | 1.133 | 0.578 | 1.135 | 1.017 | 1.555 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9015
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
0.990
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.235
|
0.176
|
0.022
|
0.118
|
0.789
|
0.351
|
0.622
|
0.215
|
0.205
|
0.073
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009332
|
1.000
|
1.000
|
Hsc_gene_20036.t2
|
Hsc_gene_20036.t1;Hsc_gene_20036.t2
|
— |
Q9D0U9.1 Protein ARV1 [Mus musculus]
|
KAI1702143.1 arv1-like family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0032366
|
GO:0008150_0.836|GO:0009987_0.786|GO:0005575_0.770|GO:0110165_0.766|GO:0016020_0.749|GO:0071944_0.724|GO:0005886_0.715|GO:0005622_0.689|GO:0005737_0.689|GO:0005773_0.651|GO:0043226_0.651|GO:0043227_0.651|GO:0043229_0.651|GO:0043231_0.651|GO:0008152_0.647|GO:0006810_0.640|GO:0051179_0.640|GO:0051234_0.640|GO:0044238_0.621|GO:0012505_0.603|GO:0006629_0.597|GO:0065007_0.550|GO:0005783_0.521
|
IPR007290+4-184_4-220+
|
— |
PF04161+4-184+Arv1-like_family
|
— |
PTHR14467+4-220+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-227
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.497
|
26413.860
|
7.384
|
3.500
|
16.300
|
22.907
|
35.683
|
64.317
|
9.692
|
6.608
|
40.969
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
315.766
|
454.145
|
443.860
|
235.165
|
152.177
|
149.747
|
49.149
|
154.300
|
49.618
|
729.808
|
438.298
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.261
|
-1.087
|
-0.809
|
-0.661
|
— |
-1.609
|
— |
-1.522
|
-4.004
|
— | — | — | — |
No JSON data available for plots.