Hg_chrom5_TN10mRNA_9586
Organism: Heterodera glycines Gene Locus: chr5:3788503-3792045 Feature type: polypeptideProtein Sequence
Length: 767
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.788 | 1.243 | 0.782 | 0.36 | 1.173 | 1.571 | 0.823 | 0.978 | 0.724 | 1.216 | 0.988 | 1.15 | 1.05 | 0.953 | 1.011 | 1.937 | 0.876 | 0.691 | 0.802 | 0.46 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9016
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.837
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RMRKRAK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.255
|
0.123
|
0.025
|
0.718
|
0.191
|
0.335
|
0.273
|
0.125
|
0.389
|
0.041
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009333
|
1.000
|
1.000
|
Hsc_gene_20037.t1
|
Hsc_gene_20037.t1;Hsc_gene_20037.t2
|
— | — |
KAI1718388.1 SH3-containing GRB2-like protein 3-interacting protein 1 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.952|GO:0005575_0.867|GO:0110165_0.862|GO:0009987_0.808|GO:0016020_0.797|GO:0005622_0.666|GO:0043226_0.622|GO:0016043_0.600|GO:0071840_0.600|GO:0071944_0.594|GO:0005886_0.581|GO:0043229_0.572|GO:0043227_0.551|GO:0006996_0.538|GO:0005737_0.535|GO:0003674_0.528|GO:0005488_0.528|GO:0051179_0.523|GO:0051234_0.503
|
IPR027267+2-278_5-275+|IPR031160+4-254+
|
— |
PF22699+15-266+GEM-interacting_protein-like,_FCH_domain
|
— |
PTHR23065+9-714+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
252-299;335-767
|
2.000
|
1-251;300-334
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.910
|
84116.810
|
7.723
|
8.500
|
24.772
|
8.344
|
55.150
|
44.850
|
13.429
|
11.343
|
52.803
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
greenyellow
|
2576.721
|
5636.984
|
2680.015
|
2425.129
|
2377.626
|
1859.720
|
3187.764
|
2563.647
|
1226.180
|
2579.439
|
1999.471
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.303
|
-1.354
|
— | — |
-0.340
|
0.789
|
0.358
|
0.458
|
— | — | — | — | — |
No JSON data available for plots.