Hg_chrom5_TN10mRNA_9593
Organism: Heterodera glycines Gene Locus: chr5:3805584-3808457 Feature type: polypeptideProtein Sequence
Length: 264
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.101 | 1.498 | 1.102 | 0.261 | 0.631 | 0.68 | 1.037 | 0.568 | 1.599 | 1.484 | 0.631 | 1.783 | 0.947 | 0.947 | 1.082 | 0.974 | 0.745 | 1.377 | 0.0 | 0.446 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9023
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide|peroxisomal_targeting_signal
|
mitochondrion
|
— |
KVKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.142
|
0.809
|
0.292
|
0.351
|
0.028
|
0.187
|
0.021
|
0.351
|
0.074
|
0.075
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009339
|
1.000
|
1.000
|
Hsc_gene_20045.t1
|
Hsc_gene_20045.t1
|
— |
O02691.3 3-hydroxyacyl-CoA dehydrogenase type-2 [Bos taurus]
|
KJH49887.1 oxidoreductase, short chain dehydrogenase/reductase family protein [Dictyocaulus viviparus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491
|
GO:0008150_0.756|GO:0003674_0.689|GO:0005575_0.613|GO:0008152_0.609|GO:0110165_0.600|GO:0003824_0.551|GO:0009987_0.544
|
IPR002347+13-30_13-213_86-97_145-161_151-159_171-190_192-209_226-246+|IPR020904+158-186+|IPR036291+13-262+
|
— |
PF00106+13-213+short_chain_dehydrogenase
|
G3DSA:3.40.50.720:FF:000215+3-264+3-hydroxyacyl-CoA_dehydrogenase_type-2
|
PTHR43658+9-263+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-264
|
7n09_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.810
|
28171.530
|
6.720
|
0.500
|
20.455
|
6.061
|
40.909
|
59.091
|
10.606
|
9.848
|
56.818
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
1852.021
|
1803.867
|
1293.906
|
2727.271
|
2804.107
|
1844.054
|
1881.024
|
963.993
|
927.562
|
2412.586
|
1776.147
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.710
|
0.459
|
1.185
|
— |
-0.589
|
— |
-1.040
|
1.107
|
-1.491
|
1.725
|
— | — | — |
No JSON data available for plots.