Hg_chrom5_TN10mRNA_9595
Organism: Heterodera glycines Gene Locus: chr5:3813629-3816840 Feature type: polypeptideProtein Sequence
Length: 537
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.909 | 0.823 | 1.05 | 0.449 | 1.024 | 0.812 | 1.153 | 0.931 | 1.49 | 1.032 | 0.988 | 1.534 | 0.931 | 0.609 | 1.254 | 0.904 | 1.038 | 1.326 | 0.573 | 0.712 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9025
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KKQLMVGAAITTREKAR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.485
|
0.189
|
0.098
|
0.602
|
0.153
|
0.248
|
0.120
|
0.052
|
0.174
|
0.040
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009340
|
1.000
|
1.000
|
Hsc_gene_20047.t1
|
Hsc_gene_20047.t1
|
— |
Q9GZH3.2 Inosine-5'-monophosphate dehydrogenase [Caenorhabditis elegans]
|
KAF7638584.1 Inosine-5'-monophosphate dehydrogenase [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824|GO:0003938|GO:0006164|GO:0016491
|
GO:0008150_0.731|GO:0003674_0.619|GO:0005575_0.609|GO:0110165_0.590|GO:0009987_0.512
|
IPR000644+133-192_135-182_136-187_199-257_201-250_204-252+|IPR001093+47-504_47-527+|IPR005990+32-534_35-537_47-502_47-535+|IPR013785+35-537+|IPR015875+342-354+|IPR046342+135-249+
|
SM00116+136-187_204-252+|SM01240+46-527+
|
PF00478+47-527+IMP_dehydrogenase_/_GMP_reductase_domain|PF00571+135-182_201-250+CBS_domain
|
G3DSA:3.20.20.70:FF:000086+35-537+IMP_dehydrogenase,_putative
|
PTHR11911+32-534+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-22
|
1.000
|
23-537
|
4z0g_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.755
|
58652.180
|
8.352
|
9.000
|
26.443
|
8.380
|
45.810
|
54.190
|
14.525
|
11.918
|
52.700
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
turquoise
|
2304.817
|
2143.081
|
1544.582
|
2711.085
|
3233.031
|
2851.296
|
3751.449
|
1814.854
|
1699.429
|
2040.487
|
1894.320
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.702
|
0.202
|
0.921
|
0.222
|
-0.166
|
0.407
|
-0.757
|
1.191
|
— | — | — | — | — |
No JSON data available for plots.