Hg_chrom5_TN10mRNA_9597
Organism: Heterodera glycines Gene Locus: chr5:3818959-3820751 Feature type: polypeptideProtein Sequence
Length: 390
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.775 | 1.073 | 1.026 | 0.442 | 1.453 | 0.986 | 0.672 | 1.154 | 1.083 | 1.282 | 1.166 | 1.357 | 1.282 | 0.542 | 1.884 | 1.136 | 0.715 | 1.01 | 0.394 | 0.226 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9027
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKRK,KKRKR,KKRKLE,GEKDEKRPKRKKRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.935
|
0.149
|
0.009
|
0.147
|
0.022
|
0.005
|
0.039
|
0.002
|
0.007
|
0.030
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004066
|
1.000
|
2.000
|
Hsc_gene_20049.t1;Hsc_gene_20049.t2
|
Hsc_gene_20049.t1;Hsc_gene_20049.t2
|
— | — |
KAH7715549.1 Protein H35B03.2 a [Aphelenchus avenae]
|
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008033
|
GO:0005575_0.921|GO:0110165_0.814|GO:0008150_0.776|GO:0005622_0.774|GO:0016020_0.747|GO:0009987_0.730|GO:0043226_0.728|GO:0043229_0.713|GO:0043227_0.670|GO:0043231_0.644|GO:0008152_0.614|GO:0044238_0.612|GO:0044237_0.607|GO:0009058_0.603|GO:0043170_0.602|GO:0044249_0.591|GO:0009059_0.588|GO:0006139_0.585|GO:0010467_0.585|GO:0003674_0.568|GO:0034654_0.565|GO:0090304_0.565|GO:0141187_0.558|GO:0005634_0.556|GO:0016070_0.556|GO:0032774_0.554|GO:0032991_0.547|GO:0005488_0.535|GO:0006396_0.526|GO:0006399_0.516|GO:0008033_0.512
|
IPR002738+1-306_9-271+|IPR016195+25-277+
|
— |
PF01876+9-271+RNase_P_subunit_p30
|
— |
PTHR13031+1-306+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
327-390
|
1.000
|
1-326
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.804
|
44329.580
|
9.854
|
14.500
|
33.590
|
8.205
|
54.359
|
45.641
|
19.231
|
14.359
|
45.641
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
951.377
|
984.371
|
672.255
|
795.005
|
818.241
|
648.457
|
832.887
|
665.196
|
948.814
|
1419.510
|
1217.783
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.780
|
-0.445
|
0.351
|
— |
-0.321
|
0.372
|
— |
0.467
|
— | — | — | — | — |
No JSON data available for plots.