Hg_chrom5_TN10mRNA_9601
Organism: Heterodera glycines Gene Locus: chr5:3845886-3847375 Feature type: polypeptideProtein Sequence
Length: 279
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.75 | 0.834 | 1.238 | 0.371 | 2.569 | 1.287 | 0.896 | 0.179 | 0.717 | 1.066 | 0.978 | 1.687 | 1.294 | 0.689 | 1.463 | 1.075 | 0.529 | 0.978 | 0.0 | 0.211 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9031
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
FKVK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.484
|
0.375
|
0.027
|
0.600
|
0.175
|
0.065
|
0.268
|
0.005
|
0.047
|
0.168
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009343
|
1.000
|
1.000
|
Hsc_gene_20052.t1
|
Hsc_gene_20052.t1
|
— |
Q9VBX1.2 Ribosome quality control complex subunit NEMF homolog [Drosophila melanogaster]
|
KAF7638583.1 NFACT-R_1 domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.754|GO:0110165_0.752|GO:0008150_0.741|GO:0005622_0.716|GO:0009987_0.702|GO:0005737_0.632|GO:0071840_0.619|GO:0016043_0.606|GO:0008152_0.566|GO:0043170_0.564|GO:0044238_0.559|GO:0006996_0.558|GO:0009058_0.557|GO:0044237_0.557|GO:0009059_0.549|GO:0010467_0.549|GO:0044249_0.549|GO:0019538_0.539|GO:0043226_0.505|GO:0009056_0.504
|
IPR021846+175-268+|IPR051608+16-278+
|
— |
PF11923+175-268+NFACT_protein_C-terminal_domain
|
— |
PTHR15239+16-278+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
49-189
|
2.000
|
1-48;190-279
|
9gy4_Z
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.851
|
31337.750
|
4.276
|
-23.500
|
36.201
|
5.735
|
55.556
|
44.444
|
13.978
|
22.222
|
46.237
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkgrey
|
234.772
|
317.566
|
158.215
|
132.697
|
119.442
|
107.641
|
291.134
|
349.702
|
148.640
|
361.999
|
270.559
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.237
|
-1.396
|
— | — | — |
1.448
|
1.595
|
— | — | — | — | — | — |
No JSON data available for plots.