Hg_chrom5_TN10mRNA_9602
Organism: Heterodera glycines Gene Locus: chr5:3847787-3852311 Feature type: polypeptideProtein Sequence
Length: 1,037
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.673 | 0.74 | 1.21 | 0.333 | 2.105 | 0.791 | 0.608 | 0.916 | 0.921 | 1.043 | 1.067 | 1.702 | 0.857 | 1.168 | 2.342 | 0.909 | 0.759 | 0.672 | 0.742 | 0.567 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9032
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRHR,RRKR,PKLKRKR,KRVIAPRRRSRRRSD,RRVDRRRSRMERERER,RKSARSRSPAERRRR.,KRRRDKPYEKRVIAPRRRS,RRRDKPYEKRVIAPRRRSR,RRDKPYEKRVIAPRRRSRR,RRRSDGPSSEEEENRRVDR,RRSDGPSSEEEENRRVDRR,RRRSRMEREREREQKRKEM,RRSRMEREREREQKRKEMR,TKTKGERKKATEQKENGGKGREKERRHDEKDRDHDRGREGGTKRRDSLNSQSRREEKDRDSSREKRREKERHRERERSTERERNRDRERRREREREEAGRKSARSRSPAERRRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.908
|
0.025
|
0.006
|
0.158
|
0.027
|
0.025
|
0.023
|
0.012
|
0.047
|
0.057
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009344
|
1.000
|
1.000
|
Hsc_gene_20053.t1
|
Hsc_gene_20053.t1
|
— |
Q5R7X2.1 U2 snRNP-associated SURP motif-containing protein [Pongo abelii]
|
KAI1708009.1 surp module domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723|GO:0006396
|
GO:0003674_0.875|GO:0005488_0.861|GO:0097159_0.780|GO:0003676_0.765|GO:0003723_0.765|GO:0005575_0.762|GO:0110165_0.761|GO:0008150_0.731|GO:0005622_0.726|GO:0009987_0.699|GO:0016020_0.694|GO:0043226_0.681|GO:0043229_0.666|GO:0065007_0.663|GO:0003729_0.660|GO:0050789_0.647|GO:0050794_0.633|GO:0032501_0.601|GO:0008152_0.598|GO:0043170_0.598|GO:0071840_0.589|GO:0005634_0.588|GO:0043227_0.588|GO:0043231_0.588|GO:0006139_0.579|GO:0044238_0.579|GO:0009058_0.578|GO:0009059_0.578|GO:0044237_0.578|GO:0044249_0.578|GO:0032502_0.574|GO:0048856_0.574|GO:0010467_0.571|GO:0032991_0.570|GO:0016043_0.568|GO:0090304_0.568|GO:0007275_0.567|GO:0034654_0.558|GO:0141187_0.549|GO:0016070_0.545|GO:0019222_0.541|GO:0032774_0.540|GO:0048518_0.538|GO:0030154_0.536|GO:0048468_0.536|GO:0048869_0.536|GO:0031323_0.529|GO:0060255_0.527|GO:0005737_0.520|GO:0080090_0.520|GO:0006396_0.519|GO:0048522_0.519|GO:0009889_0.517|GO:0031326_0.517|GO:0023052_0.515|GO:0007154_0.514|GO:0010468_0.512|GO:0010556_0.512|GO:0019538_0.512
|
IPR000061+376-426_376-430_378-421+|IPR000504+205-287_206-283_207-281+|IPR006569+534-679_540-668_541-676+|IPR008942+536-675_540-671+|IPR012677+141-290+|IPR013170+871-920_872-918+|IPR035967+348-434_354-432+|IPR035979+197-286+|IPR047488+871-918+|IPR051485+9-912+
|
SM00360+206-283+|SM00582+541-676+|SM00648+376-430+|SM01115+871-920+
|
PF00076+207-281+RNA_recognition_motif|PF01805+376-426+Surp_module|PF04818+540-668+CID_domain|PF08312+872-918+cwf21_domain
|
— |
PTHR23140+9-912+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-206;474-545;687-1037
|
2.000
|
207-473;546-686
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.591
|
120575.780
|
6.657
|
1.500
|
39.634
|
7.811
|
56.895
|
43.105
|
20.347
|
19.286
|
43.202
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
2884.606
|
6552.196
|
2907.242
|
2888.958
|
2913.787
|
2445.053
|
2526.629
|
2692.138
|
3837.454
|
1144.807
|
2298.799
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.403
|
-1.319
|
0.100
|
— |
-0.238
|
— | — | — |
1.628
|
— | — | — | — |
No JSON data available for plots.