SCN Proteipedia

Hg_chrom5_TN10mRNA_9603

Organism: Heterodera glycines Gene Locus: chr5:3853614-3855040 Feature type: polypeptide

Protein Sequence

Length: 380

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.796	0.979	0.957	0.363	0.921	1.282	0.94	1.447	0.994	1.067	0.718	2.012	1.243	0.709	1.396	0.789	0.863	1.475	1.417	1.006	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9033	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	22-J4_Male	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.375	0.256	0.035	0.573	0.104	0.413	0.117	0.008	0.449	0.072

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000290	8.000	1.000	Hsc_gene_20054.t1	Hsc_gene_12318.t1;Hsc_gene_20054.t1	—	P34265.4 Probable tyrosine-protein kinase kin-31 [Caenorhabditis elegans]	KAF7635113.1 Tyrosine-protein kinase [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0005524\|GO:0006468	GO:0008150_0.929\|GO:0009987_0.866\|GO:0005575_0.849\|GO:0110165_0.841\|GO:0065007_0.723\|GO:0003674_0.721\|GO:0050789_0.713\|GO:0005622_0.700\|GO:0003824_0.688\|GO:0050794_0.656\|GO:0050896_0.626\|GO:0005737_0.618\|GO:0016740_0.606\|GO:0032501_0.600\|GO:0051716_0.589\|GO:0008152_0.582\|GO:0044237_0.546\|GO:0023052_0.536\|GO:0007154_0.535\|GO:0140096_0.533\|GO:0032502_0.529\|GO:0016020_0.527\|GO:0048518_0.516\|GO:0043170_0.511\|GO:0048856_0.508\|GO:0007165_0.503\|GO:0016772_0.503	IPR000719+118-369+\|IPR000980+8-93_10-87_10-106+\|IPR001245+120-366_196-209_231-249_276-286_295-317+\|IPR008266+237-249+\|IPR011009+100-371+\|IPR017441+124-150+\|IPR035849+8-94+\|IPR036860+2-112_4-136+\|IPR050198+7-373+	SM00252+8-93+	PF00017+10-87+SH2_domain\|PF07714+120-366+Protein_tyrosine_and_serine/threonine_kinase	G3DSA:3.30.200.20:FF:000194+107-198+protein-tyrosine_kinase_2-beta_isoform_X1	PTHR24418+7-373+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	376-380	1.000	1-375	4y95_D	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.715	42969.140	8.442	8.500	25.263	12.632	45.263	54.737	14.474	10.789	49.474

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	black	1812.198	21.911	51.465	122.436	390.373	6292.159	182.306	9692.474	5.848	1641.560	940.540

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.002	2.347	1.359	1.643	4.024	-5.099	—	-5.586	-8.251	4.595	—	—	—

No JSON data available for plots.

Back to Browser