SCN Proteipedia

Hg_chrom5_TN10mRNA_9606

Organism: Heterodera glycines Gene Locus: chr5:3858797-3862164 Feature type: polypeptide

Protein Sequence

Length: 672

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.882	0.761	0.974	0.872	1.19	1.145	0.691	1.116	1.455	1.267	1.127	1.576	1.488	0.859	1.336	0.872	0.781	0.564	0.572	1.138	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9036	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	29-J3_J4_Female_Male	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KKKRKAEEEEKTTTNKKKSTVKKTKKK	—	—	13-40	0.914	—	—	0.001	—	—	0.719	0.190	0.013	0.338	0.099	0.089	0.147	0.008	0.102	0.101

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009345	1.000	1.000	Hsc_gene_20058.t1	Hsc_gene_20057.t1;Hsc_gene_20057.t2;Hsc_gene_20058.t1	—	A8XL25.1 Flap endonuclease 1 [Caenorhabditis briggsae]	KAI1715352.1 XPG i-region domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003677\|GO:0003824\|GO:0004518\|GO:0006629\|GO:0016788	GO:0008150_0.835\|GO:0005575_0.757\|GO:0110165_0.757\|GO:0005622_0.703\|GO:0003674_0.701\|GO:0009987_0.665\|GO:0016020_0.641\|GO:0043226_0.637\|GO:0043229_0.626\|GO:0008152_0.591\|GO:0044238_0.582\|GO:0003824_0.558\|GO:0043227_0.541\|GO:0043231_0.524	IPR002641+10-177_10-180+\|IPR006084+309-668_315-329_368-387_432-449_453-473_510-525+\|IPR006085+299-394_310-394+\|IPR006086+433-505_436-520+\|IPR008918+507-540+\|IPR016035+8-255+\|IPR019974+366-380_436-450+\|IPR023426+310-632+\|IPR029060+308-520+\|IPR036279+505-636+	SM00279+507-540+\|SM00484+433-505+\|SM00485+299-394+	PF00752+310-394+XPG_N-terminal_domain\|PF00867+436-520+XPG_I-region\|PF01734+10-177+Patatin-like_phospholipase	G3DSA:1.10.150.20:FF:000009+505-572+Flap_endonuclease_1\|G3DSA:3.40.50.1010:FF:000003+303-504+Flap_endonuclease_1	PTHR11081+309-668+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	627-672	1.000	1-626	1ul1_Z	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.705	76793.340	8.488	17.500	28.720	12.202	47.321	52.679	16.220	12.500	43.601

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	lightcyan	2338.283	2086.378	2176.626	2569.614	2834.432	2986.291	2994.833	3010.316	2128.434	1636.727	1847.459

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.168	0.164	0.348	0.110	—	—	—	—	—	—	—	—	—

No JSON data available for plots.

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