SCN Proteipedia

Hg_chrom5_TN10mRNA_9608

Organism: Heterodera glycines Gene Locus: chr5:3877844-3882460 Feature type: polypeptide

Protein Sequence

Length: 1,100 (Signal peptide: 1-25)

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.846	1.459	0.628	1.881	0.53	1.678	0.877	1.591	0.323	0.713	0.702	0.588	1.667	2.15	0.779	1.455	0.879	0.675	0.35	1.016	0.0

Composition

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9038	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	23-Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	secreted	signal_peptide	extracellular	chloroplast	—	—	—	50-88	0.942	1-25	0.961	0.999	0.000	0.000	0.137	0.080	0.008	0.396	0.066	0.173	0.130	0.157	0.177	0.876

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002160	2.000	2.000	Hsc_gene_20060.t1;Hsc_gene_20060.t2	Hsc_gene_20060.t1;Hsc_gene_20060.t2	—	—	KAI1701598.1 chitin binding peritrophin-A domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005576\|GO:0008061	GO:0008150_0.967\|GO:0065007_0.947\|GO:0050789_0.942\|GO:0009987_0.931\|GO:0050794_0.931\|GO:0005575_0.924\|GO:0110165_0.915\|GO:0032502_0.882\|GO:0048856_0.882\|GO:0048869_0.812\|GO:0030154_0.809\|GO:0048468_0.779\|GO:0009653_0.760\|GO:0071944_0.718\|GO:0048646_0.711\|GO:0022414_0.705\|GO:0003006_0.696\|GO:0019953_0.686\|GO:0048609_0.686\|GO:0007276_0.684\|GO:0022412_0.680\|GO:0007281_0.678\|GO:0007292_0.677\|GO:0048477_0.677\|GO:0030703_0.670\|GO:0032501_0.666\|GO:0003674_0.665\|GO:0005488_0.635\|GO:0007275_0.620\|GO:0016043_0.544\|GO:0071840_0.544	IPR002557+105-164_106-164_108-162_179-235_180-235_182-232_277-331_278-331_280-328_409-463_410-463_412-460_508-562_509-562_511-559_597-651_598-651_600-648_680-734_681-734_683-731_842-902_843-902_850-900_942-998_943-998_945-996_1040-1096_1041-1096_1043-1094+\|IPR036508+117-166_276-329_409-459_509-559_594-648_675-731_848-903_944-1006_1036-1095+\|IPR051940+471-815+	SM00494+106-164_180-235_278-331_410-463_509-562_598-651_681-734_843-902_943-998_1041-1096+	PF01607+108-162_182-232_280-328_412-460_511-559_600-648_683-731_850-900_945-996_1043-1094+Chitin_binding_Peritrophin-A_domain	—	PTHR23301+471-815+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	332-404;458-508;733-839;999-1043	5.000	1-331;405-457;509-732;840-998;1044-1100	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.978	119584.660	8.177	37.500	18.273	13.091	46.636	53.364	11.636	6.636	61.000

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	red	red	1005.288	125.813	387.007	204.084	307.483	969.501	7605.364	791.803	31.206	478.087	286.566

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.391	0.561	-0.813	0.560	1.670	2.982	—	3.403	-4.053	—	—	—	—

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