Hg_chrom5_TN10mRNA_9609
Organism: Heterodera glycines Gene Locus: chr5:3883504-3884955 Feature type: polypeptideProtein Sequence
Length: 183
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.334 | 1.017 | 0.397 | 1.131 | 0.638 | 0.981 | 0.781 | 3.005 | 0.364 | 1.625 | 0.083 | 2.572 | 2.884 | 0.315 | 1.004 | 1.249 | 0.806 | 1.076 | 1.261 | 0.161 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9039
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
lysosome_vacuole
|
— | — | — | — |
58-95
|
0.942
|
— | — |
0.000
|
— | — |
0.054
|
0.013
|
0.003
|
0.086
|
0.526
|
0.870
|
0.355
|
0.012
|
0.443
|
0.040
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009347
|
1.000
|
1.000
|
Hsc_gene_20061.t1
|
Hsc_gene_20061.t1
|
— |
P38865.1 Copper transport protein CTR2 [Saccharomyces cerevisiae S288C]
|
KAI1718387.1 ctr copper transporter family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005375|GO:0016020|GO:0035434
|
GO:0008150_0.945|GO:0005575_0.901|GO:0110165_0.900|GO:0009987_0.889|GO:0071944_0.871|GO:0005886_0.863|GO:0016020_0.863|GO:0005622_0.753|GO:0005737_0.753|GO:0005773_0.747|GO:0043226_0.747|GO:0043227_0.747|GO:0043229_0.747|GO:0043231_0.747|GO:0012505_0.724|GO:0051179_0.638|GO:0006810_0.636|GO:0051234_0.636|GO:0055085_0.564|GO:0008152_0.533|GO:0006811_0.525|GO:0034220_0.523|GO:0044237_0.516|GO:0009058_0.514|GO:0044238_0.514|GO:0098660_0.513|GO:0042592_0.511|GO:0006812_0.508|GO:0098655_0.504|GO:0044249_0.502|GO:0098662_0.502
|
IPR007274+27-159_32-157+
|
— |
PF04145+32-157+Ctr_copper_transporter_family
|
— |
PTHR12483+27-159+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-20
|
1.000
|
21-183
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.629
|
20310.420
|
7.247
|
4.500
|
17.486
|
18.579
|
39.344
|
60.656
|
11.475
|
6.011
|
50.273
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
orange
|
973.455
|
1332.811
|
897.644
|
727.770
|
942.025
|
1668.408
|
825.260
|
1767.196
|
585.154
|
759.582
|
684.827
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.799
|
-1.010
|
-0.195
|
0.340
|
0.840
|
-1.007
|
— |
-0.958
|
— | — | — | — | — |
No JSON data available for plots.