Hg_chrom5_TN10mRNA_9610
Organism: Heterodera glycines Gene Locus: chr5:3885205-3887966 Feature type: polypeptideProtein Sequence
Length: 506
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.873 | 1.241 | 1.365 | 0.204 | 0.922 | 0.861 | 0.776 | 1.581 | 0.878 | 0.908 | 0.779 | 1.511 | 1.921 | 1.254 | 1.452 | 0.819 | 0.81 | 0.928 | 1.216 | 0.93 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9040
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.975
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
peroxisome
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.137
|
0.418
|
0.023
|
0.368
|
0.276
|
0.423
|
0.277
|
0.738
|
0.316
|
0.569
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004067
|
2.000
|
1.000
|
Hsc_gene_20062.t1
|
Hsc_gene_20062.t1
|
— |
P90682.2 Catalase [Ascaris suum]
|
KAH7727199.1 catalase B [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004096|GO:0006979|GO:0020037|GO:0042744
|
GO:0008150_0.899|GO:0003674_0.827|GO:0009987_0.793|GO:0003824_0.716|GO:0050896_0.697|GO:0005575_0.691|GO:0110165_0.691|GO:0042221_0.648|GO:0051716_0.636|GO:0016491_0.596|GO:0005622_0.586|GO:0070887_0.568|GO:0009636_0.555|GO:0016020_0.552|GO:0097237_0.550|GO:0098754_0.550|GO:0098869_0.550|GO:1990748_0.550|GO:0005737_0.542|GO:0004096_0.534|GO:0004601_0.534|GO:0016209_0.534|GO:0016684_0.534|GO:0043226_0.503
|
IPR002226+353-361+|IPR010582+435-494+|IPR011614+26-409_26-412+|IPR018028+22-502_23-498_39-62_103-121_124-141_143-161_308-335_340-366+|IPR020835+18-497+|IPR024708+62-78+|IPR024711+10-502+|IPR040333+66-496+
|
SM01060+26-412+
|
PF00199+26-409+Catalase|PF06628+435-494+Catalase-related_immune-responsive
|
G3DSA:2.40.180.10:FF:000001+21-502+Catalase
|
PTHR11465+23-498+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-26;461-506
|
1.000
|
27-460
|
9t0k_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.708
|
57706.970
|
6.943
|
4.000
|
28.458
|
14.822
|
47.826
|
52.174
|
15.415
|
13.043
|
50.791
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
3185.469
|
1122.544
|
2465.725
|
2510.533
|
3199.648
|
4233.852
|
4065.627
|
9426.189
|
1277.004
|
2844.631
|
2172.791
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.906
|
1.024
|
0.135
|
0.318
|
0.419
|
— |
1.039
|
-1.066
|
— | — | — | — | — |
No JSON data available for plots.