SCN Proteipedia

Hg_chrom5_TN10mRNA_9612

Organism: Heterodera glycines Gene Locus: chr5:3892186-3894846 Feature type: polypeptide

Protein Sequence

Length: 465

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.8	0.75	0.743	0.667	1.219	0.937	0.717	1.613	1.195	1.54	0.945	1.898	1.314	0.868	1.185	1.106	0.917	0.717	0.662	1.012	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9042	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	13-Not_Clustered	0.918

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.369	0.343	0.020	0.556	0.195	0.366	0.305	0.067	0.528	0.016

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009349	1.000	1.000	Hsc_gene_20064.t2	Hsc_gene_20064.t1;Hsc_gene_20064.t2	—	Q8IY84.1 Serine/threonine-protein kinase NIM1 [Homo sapiens]	KAH7727210.1 Protein F49C5.4 [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0005524\|GO:0006468	GO:0008150_0.954\|GO:0009987_0.923\|GO:0003674_0.845\|GO:0003824_0.843\|GO:0016740_0.843\|GO:0016772_0.839\|GO:0005575_0.838\|GO:0110165_0.838\|GO:0140096_0.835\|GO:0004672_0.827\|GO:0016301_0.827\|GO:0016773_0.827\|GO:0065007_0.820\|GO:0050789_0.817\|GO:0050794_0.795\|GO:0004674_0.771\|GO:0005622_0.731\|GO:0005488_0.711\|GO:0008152_0.702\|GO:0044237_0.700\|GO:0050896_0.692\|GO:0006793_0.676\|GO:0006796_0.676\|GO:0051716_0.676\|GO:0007154_0.675\|GO:0023052_0.665\|GO:0044238_0.665\|GO:0043170_0.661\|GO:0007165_0.654\|GO:0019538_0.651\|GO:0036211_0.648\|GO:0043412_0.648\|GO:0005737_0.644\|GO:0006468_0.608\|GO:0016310_0.608\|GO:0016020_0.586\|GO:0035556_0.529\|GO:0032501_0.527\|GO:0043226_0.526	IPR000719+107-357_107-358+\|IPR008271+225-237+\|IPR011009+85-371+\|IPR017441+113-136+	SM00220+107-358+	PF00069+107-357+Protein_kinase_domain	G3DSA:1.10.510.10:FF:000571+100-374+Maternal_embryonic_leucine_zipper_kinase\|G3DSA:3.30.200.20:FF:000003+90-187+Non-specific_serine/threonine_protein_kinase	PTHR24346+58-371+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-465	5eak_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.713	52647.650	8.065	10.500	26.667	12.258	46.882	53.118	15.269	11.398	44.731

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	cyan	grey	681.739	401.397	968.090	328.622	128.791	204.457	261.425	1677.278	36.220	1466.671	853.621

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.039	-0.426	-1.448	-1.381	0.680	0.367	2.936	-2.539	-5.455	—	-3.199	—	—

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