Hg_chrom5_TN10mRNA_9613
Organism: Heterodera glycines Gene Locus: chr5:3897077-3898531 Feature type: polypeptideProtein Sequence
Length: 345
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.18 | 0.741 | 0.632 | 0.3 | 0.29 | 1.263 | 0.725 | 0.435 | 1.031 | 2.076 | 0.878 | 0.853 | 1.932 | 0.557 | 0.355 | 1.284 | 0.95 | 1.318 | 2.007 | 1.108 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9043
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— | — |
8-34
|
0.912
|
— | — | — | — |
0.000
|
— | — |
0.096
|
0.198
|
0.079
|
0.056
|
0.356
|
0.285
|
0.837
|
0.045
|
0.212
|
0.091
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009350
|
1.000
|
1.000
|
Hsc_gene_20065.t1
|
Hsc_gene_20065.t1
|
— |
Q8R1T4.1 UDP-N-acetylglucosamine transporter [Mus musculus]
|
KAI1702128.1 nucleotide-sugar transporter domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000139|GO:0015165|GO:0016020|GO:0090481
|
GO:0005575_0.855|GO:0110165_0.855|GO:0016020_0.831|GO:0071944_0.812|GO:0005886_0.806|GO:0008150_0.803|GO:0009987_0.755|GO:0005622_0.740|GO:0005737_0.740|GO:0006810_0.732|GO:0051179_0.732|GO:0051234_0.732|GO:0055085_0.709|GO:0043226_0.704|GO:0043229_0.691|GO:0005773_0.683|GO:0043227_0.683|GO:0043231_0.683|GO:0012505_0.634|GO:0003674_0.621|GO:0005215_0.578|GO:0022857_0.578|GO:0071705_0.571|GO:0015711_0.558|GO:1901264_0.537|GO:0015748_0.505
|
IPR007271+1-345_8-337_10-331+
|
— |
PF04142+10-331+Nucleotide-sugar_transporter
|
— |
PTHR10231+8-337+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-345
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.795
|
37974.510
|
9.590
|
9.500
|
13.623
|
14.203
|
36.522
|
63.478
|
8.406
|
5.217
|
50.145
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
saddlebrown
|
1040.550
|
1210.229
|
864.755
|
946.894
|
1062.258
|
1134.052
|
1235.412
|
1073.723
|
525.292
|
1335.693
|
988.378
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.715
|
-0.491
|
0.240
|
0.134
|
— | — | — |
0.344
|
— | — | — | — | — |
No JSON data available for plots.