Hg_chrom5_TN10mRNA_9614
Organism: Heterodera glycines Gene Locus: chr5:3899331-3900323 Feature type: polypeptideProtein Sequence
Length: 188
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.742 | 0.866 | 0.58 | 0.367 | 1.507 | 0.546 | 0.76 | 1.064 | 1.655 | 1.509 | 1.451 | 2.19 | 1.625 | 0.511 | 1.086 | 0.76 | 0.785 | 0.967 | 0.818 | 0.782 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9044
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Not_Clustered
|
0.328
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — |
1-21
|
0.880
|
— | — | — | — |
0.000
|
— | — |
0.463
|
0.293
|
0.024
|
0.429
|
0.233
|
0.125
|
0.147
|
0.011
|
0.087
|
0.170
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009351
|
1.000
|
1.000
|
Hsc_gene_20066.t1
|
Hsc_gene_20066.t1
|
— |
Q5F359.1 Trafficking protein particle complex subunit 5 [Gallus gallus]
|
KAI1702258.1 transport protein particle (TRAPP) component domain-containing protein [Ditylenchus destructor];KAI1704766.1 transport protein particle (TRAPP) component domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0030008|GO:0048193
|
GO:0005575_0.902|GO:0110165_0.752|GO:0005622_0.627|GO:0005737_0.590
|
IPR007194+29-174+|IPR016696+1-188_10-183_24-175+|IPR024096+22-184+
|
— |
PF04051+29-174+Transport_protein_particle_(TRAPP)_component
|
G3DSA:3.30.1380.20:FF:000005+22-188+Trafficking_protein_particle_complex_subunit_5
|
PTHR20902+10-183+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-188
|
7b70_F
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.726
|
21518.260
|
9.574
|
7.000
|
29.255
|
11.702
|
45.213
|
54.787
|
17.021
|
12.234
|
39.894
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
909.654
|
517.143
|
508.832
|
528.398
|
622.604
|
526.194
|
624.139
|
656.344
|
602.630
|
2033.894
|
1420.495
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.254
|
— |
0.164
|
0.205
|
-0.228
|
0.257
|
— | — | — | — | — | — | — |
No JSON data available for plots.