Hg_chrom5_TN10mRNA_9615
Organism: Heterodera glycines Gene Locus: chr5:3900465-3902328 Feature type: polypeptideProtein Sequence
Length: 381
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.61 | 1.404 | 0.62 | 1.177 | 0.744 | 0.942 | 0.531 | 1.575 | 1.05 | 1.525 | 0.954 | 2.007 | 2.406 | 0.555 | 1.768 | 1.087 | 0.861 | 0.636 | 1.211 | 0.463 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9045
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— |
RRVFKLRLSKTKKLR.,KRGQFAFGSMLGKNARK
|
1-35
|
0.951
|
37-70
|
0.997
|
— | — |
0.003
|
— | — |
0.060
|
0.158
|
0.006
|
0.201
|
0.228
|
0.196
|
0.911
|
0.006
|
0.173
|
0.456
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004068
|
1.000
|
2.000
|
Hsc_gene_20067.t1;Hsc_gene_20067.t2
|
Hsc_gene_20067.t1;Hsc_gene_20067.t2
|
— |
Q9QYK4.2 Heparan-sulfate 6-O-sulfotransferase 3 [Mus musculus]
|
KAI1703549.1 sulfotransferase family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008146|GO:0016020
|
GO:0008150_0.743|GO:0003674_0.645|GO:0005575_0.644|GO:0110165_0.640|GO:0016020_0.583|GO:0005622_0.565|GO:0043226_0.538|GO:0003824_0.516|GO:0043229_0.515|GO:0043227_0.509
|
IPR005331+95-365+|IPR010635+43-379+|IPR027417+93-380+
|
— |
PF03567+95-365+Sulfotransferase_family
|
— |
PTHR12812+43-379+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-381
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.578
|
44498.830
|
10.531
|
33.000
|
25.984
|
14.961
|
48.556
|
51.444
|
18.110
|
7.874
|
42.520
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
834.316
|
842.003
|
475.404
|
504.612
|
474.372
|
414.854
|
467.257
|
585.513
|
464.906
|
1889.950
|
1279.217
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.053
|
-0.876
|
0.194
|
— |
-0.178
|
— |
0.392
|
— | — | — | — | — | — |
No JSON data available for plots.