SCN Proteipedia

Hg_chrom5_TN10mRNA_9616

Organism: Heterodera glycines Gene Locus: chr5:3903167-3909808 Feature type: polypeptide

Protein Sequence

Length: 1,209

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.741	1.096	0.782	0.599	1.31	1.103	0.63	1.117	0.974	1.33	1.065	1.265	1.493	0.938	1.418	0.945	0.881	0.852	1.782	0.778	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9046	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Eggs_Female	0.981

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	mitochondrial_transit_peptide	mitochondrion	—	KRQLSRLKEFRKIVREWKK	—	—	—	—	—	—	0.000	—	—	0.238	0.938	0.038	0.283	0.039	0.064	0.054	0.036	0.038	0.018

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009352	1.000	1.000	Hsc_gene_20068.t1	Hsc_gene_20068.t1;Hsc_gene_20072.t1	—	P54099.3 DNA polymerase subunit gamma-1 [Mus musculus]	KAF7634035.1 POLAc domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003677\|GO:0003887\|GO:0005760\|GO:0006260	GO:0005575_0.868\|GO:0110165_0.867\|GO:0008150_0.864\|GO:0009987_0.817\|GO:0005622_0.809\|GO:0016020_0.795\|GO:0043226_0.753\|GO:0043229_0.736\|GO:0005737_0.710\|GO:0003674_0.705\|GO:0043227_0.705\|GO:0008152_0.702\|GO:0044238_0.694\|GO:0043231_0.684\|GO:0043170_0.680\|GO:0044237_0.679\|GO:0009058_0.678\|GO:0044249_0.661\|GO:0009059_0.647\|GO:0006139_0.640\|GO:0034654_0.625\|GO:0090304_0.623\|GO:0141187_0.615\|GO:0006259_0.590\|GO:0071897_0.585\|GO:0003824_0.560\|GO:0050896_0.527\|GO:0071840_0.527\|GO:0016043_0.516\|GO:0005739_0.506	IPR001098+800-1128+\|IPR002297+96-1206_286-300_1078-1094_1131-1146_1147-1163+\|IPR012337+219-484+\|IPR019760+873-892+\|IPR041336+144-399_431-480+\|IPR043502+693-1175+	SM00482+800-1128+	PF18136+144-399_431-480+DNA_mitochondrial_polymerase_exonuclease_domain	—	PTHR10267+96-1206+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-1209	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.779	139328.460	9.083	35.500	28.371	12.572	49.380	50.620	16.212	12.159	44.913

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	2063.726	1981.017	2266.271	1774.543	1624.713	1434.976	2335.706	2129.673	1980.890	2463.047	2256.408

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-0.296	-0.244	-0.159	-0.165	0.713	0.463	0.276	—	—	—	—	—

No JSON data available for plots.

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