Hg_chrom5_TN10mRNA_9617
Organism: Heterodera glycines Gene Locus: chr5:3909904-3913475 Feature type: polypeptideProtein Sequence
Length: 586
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.694 | 0.754 | 0.434 | 0.765 | 0.768 | 0.656 | 0.427 | 0.939 | 1.251 | 2.214 | 0.44 | 1.205 | 2.275 | 1.083 | 1.08 | 1.414 | 0.923 | 0.983 | 0.656 | 1.355 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9047
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.666
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.132
|
0.085
|
0.018
|
0.176
|
0.545
|
0.302
|
0.411
|
0.018
|
0.403
|
0.022
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009353
|
1.000
|
1.000
|
Hsc_gene_20069.t1
|
— | — |
P34535.1 LIMR family protein R05D3.2 [Caenorhabditis elegans]
|
KAI1704761.1 LMBR1-like membrane protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.965|GO:0009987_0.763|GO:0065007_0.711|GO:0050789_0.689|GO:0050896_0.671|GO:0050794_0.668|GO:0005575_0.666|GO:0110165_0.666|GO:0032501_0.653|GO:0051716_0.653|GO:0023052_0.648|GO:0007154_0.643|GO:0005886_0.642|GO:0016020_0.642|GO:0071944_0.642|GO:0007165_0.618|GO:0032502_0.590|GO:0005622_0.534|GO:0043226_0.520|GO:0005737_0.503|GO:0005773_0.503|GO:0043227_0.503|GO:0043229_0.503|GO:0043231_0.503
|
IPR006876+23-264_356-535+|IPR008075+2-558_82-104_124-146_369-390_424-444_454-475+
|
— |
PF04791+23-264_356-535+LMBR1-like_membrane_protein
|
— |
PTHR12625+2-558+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-586
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.769
|
66693.350
|
8.389
|
12.500
|
17.065
|
15.529
|
38.396
|
61.604
|
10.068
|
6.997
|
45.051
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
greenyellow
|
1997.357
|
1524.592
|
1246.034
|
1064.471
|
963.028
|
899.215
|
1277.849
|
1366.453
|
543.595
|
5202.625
|
3205.898
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.522
|
-0.655
|
-0.117
|
-0.177
|
— |
0.517
|
0.499
|
— |
-3.356
|
— | — | — | — |
No JSON data available for plots.