Hg_chrom5_TN10mRNA_9619
Organism: Heterodera glycines Gene Locus: chr5:3916251-3917881 Feature type: polypeptideProtein Sequence
Length: 275
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.803 | 1.776 | 0.595 | 1.63 | 0.727 | 1.958 | 0.606 | 0.909 | 1.051 | 1.671 | 0.386 | 1.283 | 1.212 | 0.699 | 1.633 | 1.143 | 0.358 | 0.992 | 1.119 | 0.749 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9049
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.893
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-25
|
0.705
|
0.993
|
0.000
|
0.000
|
0.178
|
0.607
|
0.060
|
0.210
|
0.074
|
0.151
|
0.117
|
0.392
|
0.349
|
0.872
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009355
|
1.000
|
1.000
|
Hsc_gene_20071.t1
|
Hsc_gene_20071.t1
|
— | — |
KAI1715308.1 gamma interferon inducible lysosomal thiol reductase (GILT) domain-containing protein [Ditylenchus destructor]
|
No
|
-0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016671
|
GO:0005575_0.753|GO:0110165_0.751|GO:0008150_0.671|GO:0005622_0.641|GO:0005737_0.589
|
IPR004911+78-255_98-198+
|
— |
PF03227+98-198+Gamma_interferon_inducible_lysosomal_thiol_reductase_(GILT)
|
— |
PTHR13234+78-255+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-275
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.891
|
31235.960
|
8.552
|
10.500
|
20.000
|
10.182
|
45.455
|
54.545
|
12.364
|
7.636
|
48.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
lightgreen
|
733.610
|
288.445
|
403.321
|
823.525
|
474.071
|
807.709
|
188.637
|
1579.258
|
18.819
|
1483.565
|
855.817
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.256
|
1.376
|
1.138
|
-0.830
|
0.785
|
-2.088
|
0.868
|
-2.925
|
-4.599
|
5.673
|
— | — | — |