Hg_chrom5_TN10mRNA_9621
Organism: Heterodera glycines Gene Locus: chr5:3921678-3923292 Feature type: polypeptideProtein Sequence
Length: 300
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.279 | 0.93 | 0.909 | 0.69 | 1.667 | 1.538 | 0.714 | 0.667 | 1.037 | 1.847 | 0.505 | 0.588 | 0.926 | 0.449 | 1.905 | 0.524 | 0.71 | 0.556 | 1.282 | 1.078 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9051
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Not_Clustered
|
0.739
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RRLIEGDDTNPLFRKRCI
|
— | — | — | — | — | — |
0.000
|
— | — |
0.582
|
0.147
|
0.019
|
0.500
|
0.214
|
0.217
|
0.234
|
0.037
|
0.090
|
0.086
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009357
|
1.000
|
1.000
|
Hsc_gene_20073.t1
|
Hsc_gene_20073.t1
|
— |
Q6TGY8.1 ER membrane protein complex subunit 2 [Danio rerio]
|
KAI1718368.1 ER membrane protein complex subunit 2 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.894|GO:0110165_0.884|GO:0005622_0.822|GO:0016020_0.780|GO:0005737_0.759|GO:0043226_0.752|GO:0043229_0.736|GO:0043227_0.692|GO:0043231_0.670|GO:0008150_0.669|GO:0009987_0.611
|
IPR011990+43-151_63-223_152-268+|IPR019734+51-84_85-118_153-186_187-223+|IPR039856+7-267+
|
SM00028+51-84_85-118_153-186_187-223+
|
PF22890+88-196+EMC2_TPR-like_repeat_domain
|
— |
PTHR12760+7-267+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-300
|
6y4l_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.693
|
34345.950
|
5.164
|
-5.000
|
29.000
|
10.000
|
47.000
|
53.000
|
14.000
|
15.000
|
42.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
yellow
|
1359.314
|
1226.773
|
1448.699
|
1313.567
|
1423.688
|
1370.478
|
1372.152
|
1670.229
|
1666.069
|
1012.851
|
1292.802
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.