SCN Proteipedia

Hg_chrom5_TN10mRNA_9622

Organism: Heterodera glycines Gene Locus: chr5:3923569-3924925 Feature type: polypeptide

Protein Sequence

Length: 259

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.988	1.526	0.632	0.133	1.158	1.386	0.506	0.386	0.944	1.044	1.053	1.363	1.18	2.153	1.97	1.048	0.949	0.293	1.188	0.227	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9052	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	23-Not_Clustered	0.874

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	FKRR,RKEQTKDQNGQSAPKRRRM	—	—	—	—	—	—	0.000	—	—	0.902	0.241	0.009	0.260	0.026	0.013	0.044	0.186	0.056	0.028

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009358	1.000	1.000	Hsc_gene_20074.t1	Hsc_gene_20074.t1	—	O73917.1 Paired box protein Pax-6 [Oryzias latipes]	ETN70548.1 paired box' domain protein [Necator americanus]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003677\|GO:0006355	GO:0008150_0.930\|GO:0005575_0.844\|GO:0110165_0.840\|GO:0009987_0.833\|GO:0005622_0.785\|GO:0065007_0.771\|GO:0043226_0.767\|GO:0043229_0.758\|GO:0050789_0.740\|GO:0032502_0.727\|GO:0048856_0.727\|GO:0050794_0.724\|GO:0032501_0.713\|GO:0003674_0.705\|GO:0005488_0.699\|GO:0016020_0.697\|GO:0007275_0.654\|GO:0008152_0.636\|GO:0043170_0.636\|GO:0009058_0.630\|GO:0009059_0.630\|GO:0043227_0.630\|GO:0044237_0.630\|GO:0044249_0.630\|GO:0010467_0.629\|GO:0044238_0.623\|GO:0006139_0.617\|GO:0003676_0.612\|GO:0097159_0.612\|GO:0043231_0.611\|GO:0034654_0.609\|GO:0090304_0.609\|GO:0141187_0.609\|GO:0016070_0.606\|GO:0032774_0.606\|GO:0048513_0.604\|GO:0019222_0.597\|GO:0031323_0.595\|GO:0048731_0.589\|GO:0060255_0.584\|GO:0080090_0.583\|GO:0048518_0.575\|GO:0009889_0.574\|GO:0010468_0.574\|GO:0010556_0.574\|GO:0031326_0.574\|GO:0006351_0.572\|GO:0048522_0.565\|GO:0003677_0.561\|GO:0005634_0.560\|GO:0030154_0.556\|GO:0048869_0.556\|GO:0019219_0.551\|GO:0051252_0.551\|GO:0009653_0.542\|GO:0006355_0.541\|GO:2001141_0.541\|GO:0043565_0.529\|GO:0003690_0.524\|GO:0009893_0.512\|GO:0010604_0.502	IPR001523+1-86_12-84_31-84+\|IPR009057+32-88+\|IPR036388+31-93+\|IPR043565+32-226+	SM00351+12-84+	PF00292+31-84+'Paired_box'_domain	G3DSA:1.10.10.10:FF:000003+31-92+Paired_box_protein_Pax-6	PTHR45636+32-226+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-48;99-259	1.000	49-98	6pax_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.874	29360.390	11.035	17.000	27.799	7.336	52.896	47.104	17.375	10.425	49.421

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	red	grey	61.228	30.585	58.221	64.013	37.186	43.833	110.017	53.948	15.169	107.320	67.827

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.696	0.928	—	-0.816	—	1.341	—	1.175	—	—	—	—	—

No JSON data available for plots.

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